Gene annotation
Transcriptome id Sobic.001G468100.2,Sobic.001G468100.8,Sobic.001G468100.4,Sobic.001G468100.6,Sobic.001G468100.7,Sobic.001G468100.1,Sobic.001G468100.3,Sobic.001G468100.5
Synonym CLT2, Sb01g043890
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5SAY7 , A0A1Z5SAW1 , A0A1B6QPW1 , A0A1B6QPU7 , A0A1Z5SB59
Pfam PF08627
Panther DB PTHR31326 PTHR31326:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24460 : CRT (chloroquine-resistance transporter)-like transporter 2
RAP-DB (Rice) LOC_Os03g10230.1,LOC_Os12g32650.1 : expressed protein
MaizeGDB (Corn) Zm00025a053162 , Zm00025a040645
Brachypodium PNT73615 , KQK11613 , PNT73616 , KQK23093
Barley HORVU4Hr1G070680.7 , HORVU4Hr1G070680.6 , HORVU4Hr1G070680.5 , HORVU4Hr1G070680.4 , HORVU4Hr1G070680.3 , HORVU4Hr1G070680.2 , HORVU4Hr1G070680.1 , HORVU4Hr1G070680.9 , HORVU4Hr1G070680.8 , HORVU3Hr1G041520.1 , HORVU5Hr1G016200.2 , HORVU5Hr1G016200.1 , HORVU6Hr1G045170.2 , HORVU6Hr1G045170.1 , HORVU4Hr1G070680.17 , HORVU4Hr1G070680.15 , HORVU4Hr1G070680.14 , HORVU4Hr1G070680.13 , HORVU4Hr1G070680.12 , HORVU4Hr1G070680.11 , HORVU4Hr1G070680.10
Wheat TraesCS4A02G040900 , TraesCS4B02G261400
Populus -


JBrowse

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cDNA sequences
Sobic.001G468100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
2 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
3 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
4 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
5 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
6 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
7 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
8 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
9 Sobic.003G087200 nuclease PA3, putative, expressed -
10 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
12 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
13 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
14 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
15 Sobic.006G100332 - -
16 Sobic.003G105800 No apical meristem protein, putative, expressed -
17 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
18 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
19 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -


Gene co-expression network
sample Sobic001G468100 Sobic001G468100 Sobic007G186200 Sobic007G186200 Sobic001G468100--Sobic007G186200 Sobic009G207600 Sobic009G207600 Sobic001G468100--Sobic009G207600 Sobic002G058500 Sobic002G058500 Sobic001G468100--Sobic002G058500 Sobic001G150600 Sobic001G150600 Sobic001G468100--Sobic001G150600 Sobic008G153400 Sobic008G153400 Sobic001G468100--Sobic008G153400 Sobic001G325200 Sobic001G325200 Sobic001G468100--Sobic001G325200 Sobic004G321800 Sobic004G321800 Sobic001G468100--Sobic004G321800 Sobic001G438600 Sobic001G438600 Sobic001G468100--Sobic001G438600 Sobic003G087200 Sobic003G087200 Sobic001G468100--Sobic003G087200 Sobic007G186200--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic007G186200--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic007G186200--Sobic009G226300 Sobic001G015500 Sobic001G015500 Sobic007G186200--Sobic001G015500 Sobic007G068100 Sobic007G068100 Sobic007G186200--Sobic007G068100 Sobic003G355600 Sobic003G355600 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic004G101900 Sobic004G101900 Sobic007G186200--Sobic004G101900 Sobic009G054500 Sobic009G054500 Sobic007G186200--Sobic009G054500 Sobic001G504900 Sobic001G504900 Sobic009G207600--Sobic001G504900 Sobic003G398100 Sobic003G398100 Sobic009G207600--Sobic003G398100 Sobic002G338100 Sobic002G338100 Sobic009G207600--Sobic002G338100 Sobic008G079300 Sobic008G079300 Sobic009G207600--Sobic008G079300 Sobic001G474500 Sobic001G474500 Sobic009G207600--Sobic001G474500 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic006G091700 Sobic006G091700 Sobic009G207600--Sobic006G091700 Sobic009G207600--Sobic003G087200 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic001G150600--Sobic003G087200 Sobic006G100332 Sobic006G100332 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic006G030700 Sobic006G030700 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800 Sobic008G153400--Sobic001G150600 Sobic006G199000 Sobic006G199000 Sobic008G153400--Sobic006G199000 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic008G153400--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic008G153400--Sobic003G257100 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic001G325200--Sobic003G355600 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic004G321800--Sobic001G325200 Sobic003G105800 Sobic003G105800 Sobic004G321800--Sobic003G105800 Sobic003G184900 Sobic003G184900 Sobic004G321800--Sobic003G184900 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic001G301700 Sobic001G301700 Sobic001G438600--Sobic001G301700 Sobic004G355000 Sobic004G355000 Sobic001G438600--Sobic004G355000 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic001G438600--Sobic003G428400 Sobic001G438600--Sobic007G068100 Sobic001G438600--Sobic001G015500 Sobic001G438600--Sobic001G474500 Sobic001G438600--Sobic007G186200 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000
Octagon: transcription factors


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