Gene annotation
Transcriptome id Sobic.008G012400.1
Synonym Sb08g001160, MAML-3, IPMS2, IMS1
Functional annotation 2-isopropylmalate synthase B, putative, expressed
UniProt C5YQI8
Pfam PF08502 PF00682
Panther DB PTHR10277 PTHR10277:SF42
NCBI CDD -
KEGG Orthology K01649; leuA, 2-isopropylmalate synthase
Gene Ontology GO:0009098; leucine biosynthetic process GO:00038522-isopropylmalate synthase activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G74040 : 2-isopropylmalate synthase 1
RAP-DB (Rice) LOC_Os12g04440.1 : 2-isopropylmalate synthase B, putative, expressed
MaizeGDB (Corn) Zm00025a013076 , Zm00025a033442 , Zm00025a053683 , Zm00025a041821
Brachypodium KQJ92364
Barley HORVU5Hr1G043190.1 , HORVU5Hr1G043190.4 , HORVU5Hr1G043190.5 , HORVU5Hr1G043190.2 , HORVU5Hr1G043190.3
Wheat TraesCS5B02G133500 , TraesCS5D02G139800 , TraesCS5D02G139800 , TraesCS5A02G131300 , TraesCS7A02G179500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G159250 - -
2 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
3 Sobic.001G321000 oxidoreductase, putative, expressed -
4 Sobic.002G165140 - K18693: DPP1, DPPL, diacylglycerol diphosphate phosphatase / phosphatidate phosphatase
5 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
6 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
7 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
8 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
9 Sobic.003G388251 - K01166: ribonuclease T2
10 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
11 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
12 Sobic.003G414300 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
13 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
14 Sobic.003G025900 - -
15 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
16 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
17 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
18 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
19 Sobic.001G468100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G356400 expressed protein -


Gene co-expression network
sample Sobic008G012400 Sobic008G012400 Sobic008G159250 Sobic008G159250 Sobic008G012400--Sobic008G159250 Sobic002G058500 Sobic002G058500 Sobic008G012400--Sobic002G058500 Sobic001G321000 Sobic001G321000 Sobic008G012400--Sobic001G321000 Sobic002G165140 Sobic002G165140 Sobic008G012400--Sobic002G165140 Sobic003G100800 Sobic003G100800 Sobic008G012400--Sobic003G100800 Sobic010G205500 Sobic010G205500 Sobic008G012400--Sobic010G205500 Sobic003G200100 Sobic003G200100 Sobic008G012400--Sobic003G200100 Sobic006G226400 Sobic006G226400 Sobic008G012400--Sobic006G226400 Sobic003G388251 Sobic003G388251 Sobic008G012400--Sobic003G388251 Sobic008G159250--Sobic002G165140 Sobic008G159250--Sobic008G012400 Sobic001G535800 Sobic001G535800 Sobic008G159250--Sobic001G535800 Sobic004G266400 Sobic004G266400 Sobic008G159250--Sobic004G266400 Sobic008G159250--Sobic003G200100 Sobic010G224000 Sobic010G224000 Sobic008G159250--Sobic010G224000 Sobic004G331100 Sobic004G331100 Sobic008G159250--Sobic004G331100 Sobic007G172400 Sobic007G172400 Sobic008G159250--Sobic007G172400 Sobic001G436900 Sobic001G436900 Sobic008G159250--Sobic001G436900 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic001G279100 Sobic001G279100 Sobic001G321000--Sobic001G279100 Sobic004G237400 Sobic004G237400 Sobic001G321000--Sobic004G237400 Sobic001G321000--Sobic002G058500 Sobic008G186200 Sobic008G186200 Sobic001G321000--Sobic008G186200 Sobic001G321000--Sobic003G226200 Sobic002G189400 Sobic002G189400 Sobic001G321000--Sobic002G189400 Sobic001G408200 Sobic001G408200 Sobic001G321000--Sobic001G408200 Sobic002G415900 Sobic002G415900 Sobic001G321000--Sobic002G415900 Sobic001G321000--Sobic008G012400 Sobic007G063300 Sobic007G063300 Sobic002G165140--Sobic007G063300 Sobic002G165140--Sobic004G266400 Sobic001G016700 Sobic001G016700 Sobic002G165140--Sobic001G016700 Sobic009G016600 Sobic009G016600 Sobic002G165140--Sobic009G016600 Sobic002G165140--Sobic008G159250 Sobic006G204900 Sobic006G204900 Sobic002G165140--Sobic006G204900 Sobic003G109100 Sobic003G109100 Sobic002G165140--Sobic003G109100 Sobic004G329400 Sobic004G329400 Sobic002G165140--Sobic004G329400 Sobic010G001500 Sobic010G001500 Sobic002G165140--Sobic010G001500 Sobic004G052900 Sobic004G052900 Sobic003G100800--Sobic004G052900 Sobic003G100800--Sobic007G172400 Sobic003G100800--Sobic003G109100 Sobic007G024700 Sobic007G024700 Sobic003G100800--Sobic007G024700 Sobic003G100800--Sobic004G329400 Sobic001G248300 Sobic001G248300 Sobic003G100800--Sobic001G248300 Sobic001G178700 Sobic001G178700 Sobic003G100800--Sobic001G178700 Sobic010G251200 Sobic010G251200 Sobic003G100800--Sobic010G251200 Sobic004G113400 Sobic004G113400 Sobic003G100800--Sobic004G113400 Sobic001G474500 Sobic001G474500 Sobic010G205500--Sobic001G474500 Sobic007G068100 Sobic007G068100 Sobic010G205500--Sobic007G068100 Sobic010G205500--Sobic004G266400 Sobic010G205500--Sobic003G388251 Sobic001G176600 Sobic001G176600 Sobic010G205500--Sobic001G176600 Sobic001G111150 Sobic001G111150 Sobic010G205500--Sobic001G111150 Sobic010G205500--Sobic003G100800 Sobic010G205500--Sobic010G251200 Sobic009G034700 Sobic009G034700 Sobic010G205500--Sobic009G034700 Sobic004G065000 Sobic004G065000 Sobic003G200100--Sobic004G065000 Sobic003G200100--Sobic010G001500 Sobic004G265800 Sobic004G265800 Sobic003G200100--Sobic004G265800 Sobic009G133500 Sobic009G133500 Sobic003G200100--Sobic009G133500 Sobic003G200100--Sobic001G111150 Sobic010G130200 Sobic010G130200 Sobic003G200100--Sobic010G130200 Sobic003G200100--Sobic006G204900 Sobic003G200100--Sobic002G415900 Sobic003G200100--Sobic001G436900 Sobic004G320600 Sobic004G320600 Sobic006G226400--Sobic004G320600 Sobic003G087200 Sobic003G087200 Sobic006G226400--Sobic003G087200 Sobic009G114000 Sobic009G114000 Sobic006G226400--Sobic009G114000 Sobic001G150600 Sobic001G150600 Sobic006G226400--Sobic001G150600 Sobic007G092900 Sobic007G092900 Sobic006G226400--Sobic007G092900 Sobic006G091700 Sobic006G091700 Sobic006G226400--Sobic006G091700 Sobic004G321800 Sobic004G321800 Sobic006G226400--Sobic004G321800 Sobic007G093000 Sobic007G093000 Sobic006G226400--Sobic007G093000 Sobic002G420700 Sobic002G420700 Sobic006G226400--Sobic002G420700 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic003G388251--Sobic001G325200 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic003G388251--Sobic005G178100 Sobic003G388251--Sobic009G034700 Sobic009G057300 Sobic009G057300 Sobic003G388251--Sobic009G057300 Sobic001G015500 Sobic001G015500 Sobic003G388251--Sobic001G015500
Octagon: transcription factors


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