Gene annotation
Transcriptome id Sobic.007G178100.1
Synonym Sb07g024950
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
zinc finger, C3HC4 type family protein, expressed
UniProt C5YH41
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF166
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19045; E3 ubiquitin-protein ligase BIG BROTHER and related proteins
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G19910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g43480.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a034209
Brachypodium KQJ99295 , KQJ99294
Barley HORVU7Hr1G057310.9 , HORVU7Hr1G057310.8 , HORVU7Hr1G057310.1 , HORVU7Hr1G057310.3 , HORVU7Hr1G057310.2 , HORVU7Hr1G057310.5 , HORVU7Hr1G057310.4 , HORVU7Hr1G057310.7 , HORVU7Hr1G057310.6 , HORVU7Hr1G057310.11 , HORVU7Hr1G057310.10 , HORVU7Hr1G057310.12
Wheat TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7B02G170500 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7D02G271800 , TraesCS7A02G271500 , TraesCS7A02G271500 , TraesCS7A02G271500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G208500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
2 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
3 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
5 Sobic.009G038501 - -
6 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.001G151800 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
8 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
9 Sobic.009G004200 MAC/Perforin domain containing protein, putative, expressed -
10 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
12 Sobic.006G115466 - -
13 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
14 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
15 Sobic.010G016800 - -
16 Sobic.010G133700 - -
17 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
18 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
20 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -


Gene co-expression network
sample Sobic007G178100 Sobic007G178100 Sobic009G208500 Sobic009G208500 Sobic007G178100--Sobic009G208500 Sobic001G251900 Sobic001G251900 Sobic007G178100--Sobic001G251900 Sobic001G417600 Sobic001G417600 Sobic007G178100--Sobic001G417600 Sobic001G298300 Sobic001G298300 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic004G236600 Sobic004G236600 Sobic007G178100--Sobic004G236600 Sobic001G151800 Sobic001G151800 Sobic007G178100--Sobic001G151800 Sobic004G246200 Sobic004G246200 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic009G208500--Sobic007G178100 Sobic009G208500--Sobic001G417600 Sobic010G133700 Sobic010G133700 Sobic009G208500--Sobic010G133700 Sobic006G220900 Sobic006G220900 Sobic009G208500--Sobic006G220900 Sobic009G208500--Sobic001G251900 Sobic001G430900 Sobic001G430900 Sobic009G208500--Sobic001G430900 Sobic004G338800 Sobic004G338800 Sobic009G208500--Sobic004G338800 Sobic009G208500--Sobic004G246200 Sobic004G074500 Sobic004G074500 Sobic009G208500--Sobic004G074500 Sobic001G483500 Sobic001G483500 Sobic001G251900--Sobic001G483500 Sobic003G219600 Sobic003G219600 Sobic001G251900--Sobic003G219600 Sobic004G006966 Sobic004G006966 Sobic001G251900--Sobic004G006966 Sobic006G100400 Sobic006G100400 Sobic001G251900--Sobic006G100400 Sobic005G151700 Sobic005G151700 Sobic001G251900--Sobic005G151700 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic006G115466 Sobic006G115466 Sobic001G298300--Sobic006G115466 Sobic006G271200 Sobic006G271200 Sobic001G298300--Sobic006G271200 Sobic004G102400 Sobic004G102400 Sobic001G298300--Sobic004G102400 Sobic001G003000 Sobic001G003000 Sobic001G298300--Sobic001G003000 Sobic001G085900 Sobic001G085900 Sobic001G298300--Sobic001G085900 Sobic010G129600 Sobic010G129600 Sobic001G298300--Sobic010G129600 Sobic001G436900 Sobic001G436900 Sobic001G298300--Sobic001G436900 Sobic001G298300--Sobic007G178100 Sobic006G237900 Sobic006G237900 Sobic001G298300--Sobic006G237900 Sobic008G144500 Sobic008G144500 Sobic009G038501--Sobic008G144500 Sobic009G038501--Sobic004G236600 Sobic004G236000 Sobic004G236000 Sobic009G038501--Sobic004G236000 Sobic003G360900 Sobic003G360900 Sobic009G038501--Sobic003G360900 Sobic009G038501--Sobic001G251900 Sobic005G152100 Sobic005G152100 Sobic009G038501--Sobic005G152100 Sobic001G212000 Sobic001G212000 Sobic009G038501--Sobic001G212000 Sobic009G038501--Sobic007G178100 Sobic009G236200 Sobic009G236200 Sobic009G038501--Sobic009G236200 Sobic001G488500 Sobic001G488500 Sobic004G236600--Sobic001G488500 Sobic004G236600--Sobic005G152100 Sobic002G322900 Sobic002G322900 Sobic004G236600--Sobic002G322900 Sobic004G255000 Sobic004G255000 Sobic004G236600--Sobic004G255000 Sobic004G236600--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic004G236600--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic004G236600--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic004G236600--Sobic005G215900 Sobic004G236600--Sobic009G038501 Sobic001G151800--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic001G151800--Sobic002G355200 Sobic007G125900 Sobic007G125900 Sobic001G151800--Sobic007G125900 Sobic003G232900 Sobic003G232900 Sobic001G151800--Sobic003G232900 Sobic003G348400 Sobic003G348400 Sobic001G151800--Sobic003G348400 Sobic001G151800--Sobic004G236600 Sobic005G117400 Sobic005G117400 Sobic001G151800--Sobic005G117400 Sobic006G140000 Sobic006G140000 Sobic001G151800--Sobic006G140000 Sobic001G151800--Sobic009G004200 Sobic004G246200--Sobic005G152100 Sobic005G018500 Sobic005G018500 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G246200--Sobic004G255000 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic004G246200--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic004G246200--Sobic009G054500 Sobic004G246200--Sobic008G024400 Sobic006G114800 Sobic006G114800 Sobic009G004200--Sobic006G114800 Sobic009G004200--Sobic001G151800 Sobic009G004200--Sobic009G236200 Sobic006G119200 Sobic006G119200 Sobic009G004200--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic009G004200--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic009G004200--Sobic004G347300 Sobic010G016400 Sobic010G016400 Sobic009G004200--Sobic010G016400 Sobic009G004200--Sobic006G140000 Sobic001G386400 Sobic001G386400 Sobic009G004200--Sobic001G386400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.