Gene annotation
Transcriptome id Sobic.003G214400.3,Sobic.003G214400.1,Sobic.003G214400.2
Synonym BAT1, Sb03g027370
Functional annotation amino acid permease family protein, putative, expressed
UniProt A0A1W0VYD4 , C5XQD1 , C5XQD0
Pfam PF00324
Panther DB PTHR11785 PTHR11785:SF367
NCBI CDD KOG1289; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G01170 : bidirectional amino acid transporter 1
RAP-DB (Rice) LOC_Os01g42234.2,LOC_Os01g42234.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029022 , Zm00025a026049 , Zm00025a038470 , Zm00025a028664 , Zm00025a056091
Brachypodium KQK11517 , KQK03895 , KQK08652 , PNT73590 , KQK08653 , PNT72362 , PNT72363 , PNT72361
Barley HORVU3Hr1G053090.18 , HORVU3Hr1G053090.19 , HORVU3Hr1G053090.14 , HORVU3Hr1G053090.15 , HORVU3Hr1G053090.16 , HORVU3Hr1G053090.17 , HORVU3Hr1G053090.10 , HORVU3Hr1G053090.11 , HORVU3Hr1G053090.12 , HORVU3Hr1G053090.13 , HORVU3Hr1G105870.7 , HORVU3Hr1G105870.8 , HORVU3Hr1G105870.9 , HORVU3Hr1G105870.4 , HORVU3Hr1G105870.5 , HORVU3Hr1G105870.6 , HORVU3Hr1G105870.1 , HORVU3Hr1G105870.2 , HORVU3Hr1G105870.3 , HORVU3Hr1G105870.14 , HORVU3Hr1G105870.15 , HORVU3Hr1G105870.12 , HORVU3Hr1G105870.13 , HORVU3Hr1G105870.10 , HORVU3Hr1G105870.11 , HORVU3Hr1G105920.6 , HORVU3Hr1G105920.7 , HORVU3Hr1G105920.4 , HORVU3Hr1G105920.3 , HORVU3Hr1G105920.1 , HORVU3Hr1G105920.8 , HORVU3Hr1G105920.9 , HORVU3Hr1G017330.13 , HORVU3Hr1G017330.12 , HORVU3Hr1G017330.11 , HORVU3Hr1G017330.10 , HORVU3Hr1G017330.15 , HORVU3Hr1G017330.14 , HORVU3Hr1G053090.4 , HORVU3Hr1G053090.5 , HORVU3Hr1G105920.11 , HORVU3Hr1G017330.9 , HORVU3Hr1G017330.8 , HORVU3Hr1G053090.8 , HORVU3Hr1G053090.1 , HORVU3Hr1G017330.3 , HORVU3Hr1G017330.2 , HORVU3Hr1G017330.1 , HORVU3Hr1G053090.9 , HORVU3Hr1G017330.7 , HORVU3Hr1G017330.6 , HORVU3Hr1G017330.4
Wheat TraesCS3D02G480000 , TraesCS3B02G532100 , TraesCS3A02G484600 , TraesCS3B02G531900 , TraesCS3D02G219100 , TraesCS3D02G219100 , TraesCS3A02G484700 , TraesCS2B02G322600 , TraesCS2A02G305900 , TraesCS3B02G111600 , TraesCS3A02G484900 , TraesCSU02G049700 , TraesCS3B02G247500 , TraesCS3B02G247500 , TraesCS3B02G531700 , TraesCS3A02G217200 , TraesCS3A02G217200 , TraesCS3D02G096500 , TraesCS3D02G479800 , TraesCS3A02G096000 , TraesCS2D02G304300 , TraesCS3D02G480100
Populus -


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cDNA sequences
Sobic.003G214400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
2 Sobic.003G012300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
3 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
5 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
7 Sobic.001G151800 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
8 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.002G195000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@proline-rich protein 6, putative, expressed -
10 Sobic.006G104300 gamma-glutamyltranspeptidase 1 precursor, putative, expressed K18592: GGT1_5, gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase
11 Sobic.009G004200 MAC/Perforin domain containing protein, putative, expressed -
12 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
13 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
14 Sobic.001G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
15 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
16 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
18 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
19 Sobic.001G430900 ubiquitin fusion protein, putative, expressed -
20 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic


Gene co-expression network
sample Sobic003G214400 Sobic003G214400 Sobic001G395700 Sobic001G395700 Sobic003G214400--Sobic001G395700 Sobic003G012300 Sobic003G012300 Sobic003G214400--Sobic003G012300 Sobic009G016800 Sobic009G016800 Sobic003G214400--Sobic009G016800 Sobic005G231900 Sobic005G231900 Sobic003G214400--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic003G214400--Sobic001G488500 Sobic007G178100 Sobic007G178100 Sobic003G214400--Sobic007G178100 Sobic001G151800 Sobic001G151800 Sobic003G214400--Sobic001G151800 Sobic004G236600 Sobic004G236600 Sobic003G214400--Sobic004G236600 Sobic002G195000 Sobic002G195000 Sobic003G214400--Sobic002G195000 Sobic002G058500 Sobic002G058500 Sobic001G395700--Sobic002G058500 Sobic001G395700--Sobic003G012300 Sobic002G215700 Sobic002G215700 Sobic001G395700--Sobic002G215700 Sobic006G139000 Sobic006G139000 Sobic001G395700--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic001G395700--Sobic001G227800 Sobic001G395700--Sobic002G195000 Sobic004G101900 Sobic004G101900 Sobic001G395700--Sobic004G101900 Sobic001G395700--Sobic005G231900 Sobic003G226200 Sobic003G226200 Sobic001G395700--Sobic003G226200 Sobic003G012300--Sobic001G395700 Sobic003G012300--Sobic005G231900 Sobic002G274800 Sobic002G274800 Sobic003G012300--Sobic002G274800 Sobic003G012300--Sobic003G214400 Sobic002G420700 Sobic002G420700 Sobic003G012300--Sobic002G420700 Sobic009G153000 Sobic009G153000 Sobic003G012300--Sobic009G153000 Sobic003G012300--Sobic002G058500 Sobic004G162400 Sobic004G162400 Sobic003G012300--Sobic004G162400 Sobic007G186200 Sobic007G186200 Sobic003G012300--Sobic007G186200 Sobic009G236200 Sobic009G236200 Sobic009G016800--Sobic009G236200 Sobic005G215900 Sobic005G215900 Sobic009G016800--Sobic005G215900 Sobic002G381300 Sobic002G381300 Sobic009G016800--Sobic002G381300 Sobic010G016400 Sobic010G016400 Sobic009G016800--Sobic010G016400 Sobic002G249000 Sobic002G249000 Sobic009G016800--Sobic002G249000 Sobic003G085300 Sobic003G085300 Sobic009G016800--Sobic003G085300 Sobic006G140000 Sobic006G140000 Sobic009G016800--Sobic006G140000 Sobic003G061400 Sobic003G061400 Sobic009G016800--Sobic003G061400 Sobic009G016800--Sobic001G151800 Sobic005G231900--Sobic004G162400 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic005G231900--Sobic004G236600 Sobic002G304000 Sobic002G304000 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic001G488500--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic001G488500--Sobic005G152100 Sobic004G246200 Sobic004G246200 Sobic001G488500--Sobic004G246200 Sobic001G488500--Sobic005G231900 Sobic001G488500--Sobic002G322900 Sobic004G255000 Sobic004G255000 Sobic001G488500--Sobic004G255000 Sobic001G488500--Sobic005G079900 Sobic010G206000 Sobic010G206000 Sobic001G488500--Sobic010G206000 Sobic001G488500--Sobic005G215900 Sobic009G208500 Sobic009G208500 Sobic007G178100--Sobic009G208500 Sobic001G251900 Sobic001G251900 Sobic007G178100--Sobic001G251900 Sobic001G417600 Sobic001G417600 Sobic007G178100--Sobic001G417600 Sobic001G298300 Sobic001G298300 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic007G178100--Sobic004G236600 Sobic007G178100--Sobic001G151800 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic001G151800--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic001G151800--Sobic002G355200 Sobic007G125900 Sobic007G125900 Sobic001G151800--Sobic007G125900 Sobic003G232900 Sobic003G232900 Sobic001G151800--Sobic003G232900 Sobic003G348400 Sobic003G348400 Sobic001G151800--Sobic003G348400 Sobic001G151800--Sobic004G236600 Sobic005G117400 Sobic005G117400 Sobic001G151800--Sobic005G117400 Sobic001G151800--Sobic006G140000 Sobic001G151800--Sobic009G004200 Sobic004G236600--Sobic001G488500 Sobic004G236600--Sobic005G152100 Sobic004G236600--Sobic002G322900 Sobic004G236600--Sobic004G255000 Sobic004G236600--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic004G236600--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic004G236600--Sobic008G024400 Sobic004G236600--Sobic005G215900 Sobic004G236600--Sobic009G038501 Sobic002G195000--Sobic005G231900 Sobic002G195000--Sobic001G395700 Sobic003G105800 Sobic003G105800 Sobic002G195000--Sobic003G105800 Sobic002G195000--Sobic004G162400 Sobic002G195000--Sobic002G304000 Sobic002G195000--Sobic004G101900 Sobic002G195000--Sobic005G216000 Sobic003G184900 Sobic003G184900 Sobic002G195000--Sobic003G184900 Sobic008G190900 Sobic008G190900 Sobic002G195000--Sobic008G190900
Octagon: transcription factors


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