Gene annotation
Transcriptome id Sobic.003G012300.1
Synonym ATMBAC2, Sb03g001250, BAC2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
mitochondrial carrier protein, putative, expressed
UniProt A0A1B6Q0S2
Pfam PF00153
Panther DB PTHR24089 PTHR24089:SF270
NCBI CDD KOG0762; Mitochondrial carrier protein
KEGG Orthology K15109; SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79900 : Mitochondrial substrate carrier family protein
RAP-DB (Rice) LOC_Os01g12520.1 : mitochondrial carrier protein, putative, expressed
MaizeGDB (Corn) Zm00025a035955
Brachypodium PNT70186 , KQK03367 , PNT70187 , PNT70188
Barley -
Wheat TraesCS3D02G157800 , TraesCS3B02G177000 , TraesCS3A02G149900
Populus -


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cDNA sequences
Sobic.003G012300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
2 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
3 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
4 Sobic.003G214400 amino acid permease family protein, putative, expressed -
5 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
6 Sobic.009G153000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
8 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
10 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
11 Sobic.002G195000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@proline-rich protein 6, putative, expressed -
12 Sobic.001G150650 - -
13 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
14 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
15 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
16 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
17 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
18 Sobic.001G282600 transporter family protein, putative, expressed -
19 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -


Gene co-expression network
sample Sobic003G012300 Sobic003G012300 Sobic001G395700 Sobic001G395700 Sobic003G012300--Sobic001G395700 Sobic005G231900 Sobic005G231900 Sobic003G012300--Sobic005G231900 Sobic002G274800 Sobic002G274800 Sobic003G012300--Sobic002G274800 Sobic003G214400 Sobic003G214400 Sobic003G012300--Sobic003G214400 Sobic002G420700 Sobic002G420700 Sobic003G012300--Sobic002G420700 Sobic009G153000 Sobic009G153000 Sobic003G012300--Sobic009G153000 Sobic002G058500 Sobic002G058500 Sobic003G012300--Sobic002G058500 Sobic004G162400 Sobic004G162400 Sobic003G012300--Sobic004G162400 Sobic007G186200 Sobic007G186200 Sobic003G012300--Sobic007G186200 Sobic001G395700--Sobic002G058500 Sobic001G395700--Sobic003G012300 Sobic002G215700 Sobic002G215700 Sobic001G395700--Sobic002G215700 Sobic006G139000 Sobic006G139000 Sobic001G395700--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic004G101900 Sobic004G101900 Sobic001G395700--Sobic004G101900 Sobic001G395700--Sobic005G231900 Sobic003G226200 Sobic003G226200 Sobic001G395700--Sobic003G226200 Sobic005G231900--Sobic004G162400 Sobic001G488500 Sobic001G488500 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic002G304000 Sobic002G304000 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic010G043400 Sobic010G043400 Sobic002G274800--Sobic010G043400 Sobic007G225900 Sobic007G225900 Sobic002G274800--Sobic007G225900 Sobic003G252300 Sobic003G252300 Sobic002G274800--Sobic003G252300 Sobic003G105800 Sobic003G105800 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic008G189200 Sobic008G189200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic003G214400--Sobic001G395700 Sobic003G214400--Sobic003G012300 Sobic009G016800 Sobic009G016800 Sobic003G214400--Sobic009G016800 Sobic003G214400--Sobic005G231900 Sobic003G214400--Sobic001G488500 Sobic007G178100 Sobic007G178100 Sobic003G214400--Sobic007G178100 Sobic001G151800 Sobic001G151800 Sobic003G214400--Sobic001G151800 Sobic003G214400--Sobic004G236600 Sobic003G214400--Sobic002G195000 Sobic005G178100 Sobic005G178100 Sobic002G420700--Sobic005G178100 Sobic007G035000 Sobic007G035000 Sobic002G420700--Sobic007G035000 Sobic008G153400 Sobic008G153400 Sobic002G420700--Sobic008G153400 Sobic003G087200 Sobic003G087200 Sobic002G420700--Sobic003G087200 Sobic009G114000 Sobic009G114000 Sobic002G420700--Sobic009G114000 Sobic001G150600 Sobic001G150600 Sobic002G420700--Sobic001G150600 Sobic006G091700 Sobic006G091700 Sobic002G420700--Sobic006G091700 Sobic006G226400 Sobic006G226400 Sobic002G420700--Sobic006G226400 Sobic001G015500 Sobic001G015500 Sobic002G420700--Sobic001G015500 Sobic009G153000--Sobic005G231900 Sobic009G153000--Sobic006G271200 Sobic003G266900 Sobic003G266900 Sobic009G153000--Sobic003G266900 Sobic009G208100 Sobic009G208100 Sobic009G153000--Sobic009G208100 Sobic003G289900 Sobic003G289900 Sobic009G153000--Sobic003G289900 Sobic003G269800 Sobic003G269800 Sobic009G153000--Sobic003G269800 Sobic009G153000--Sobic004G162400 Sobic009G153000--Sobic001G395700 Sobic002G346400 Sobic002G346400 Sobic009G153000--Sobic002G346400 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic004G162400--Sobic005G216000 Sobic004G162400--Sobic002G304000 Sobic004G162400--Sobic005G231900 Sobic004G162400--Sobic004G101900 Sobic004G162400--Sobic009G161000 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic009G126900 Sobic009G126900 Sobic004G162400--Sobic009G126900 Sobic004G162400--Sobic001G015500 Sobic001G325200 Sobic001G325200 Sobic007G186200--Sobic001G325200 Sobic007G186200--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic007G186200--Sobic009G226300 Sobic007G186200--Sobic001G015500 Sobic007G068100 Sobic007G068100 Sobic007G186200--Sobic007G068100 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic007G186200--Sobic004G101900 Sobic009G054500 Sobic009G054500 Sobic007G186200--Sobic009G054500
Octagon: transcription factors


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