Gene annotation
Transcriptome id Sobic.009G153000.1
Synonym Sb09g021660, ACT7
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
actin, putative, expressed
UniProt C5YYR1 , D1MF42
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF248
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09810 : actin 7
RAP-DB (Rice) LOC_Os05g36290.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a040979 , Zm00025a020451 , Zm00025a040977 , Zm00025a052678 , Zm00025a039570 , Zm00025a016937 , Zm00025a007893 , Zm00025a011910 , Zm00025a038281 , Zm00025a038282 , Zm00025a026721 , Zm00025a037260
Brachypodium KQK13511 , KQK06042 , KQK06041 , KQK08099
Barley HORVU1Hr1G074350.1 , HORVU1Hr1G074350.2 , HORVU1Hr1G074350.3 , HORVU4Hr1G008310.6 , HORVU4Hr1G008310.8 , HORVU4Hr1G008310.9 , HORVU4Hr1G008310.7 , HORVU4Hr1G008310.4 , HORVU4Hr1G008310.5 , HORVU4Hr1G008310.2 , HORVU4Hr1G008310.3 , HORVU4Hr1G008310.1 , HORVU5Hr1G000180.4 , HORVU5Hr1G000180.2 , HORVU5Hr1G000180.3 , HORVU5Hr1G000180.1 , HORVU5Hr1G117900.5 , HORVU5Hr1G117900.4 , HORVU5Hr1G117900.1 , HORVU5Hr1G117900.3 , HORVU5Hr1G117900.2 , HORVU1Hr1G002840.1 , HORVU1Hr1G002840.3 , HORVU1Hr1G002840.2 , HORVU1Hr1G002840.5 , HORVU1Hr1G002840.4 , HORVU1Hr1G002840.7 , HORVU1Hr1G002840.6
Wheat TraesCS5A02G000400 , TraesCS1B02G283900 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS1A02G020500 , TraesCS1A02G020500 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS5D02G000400 , TraesCS1A02G274400 , TraesCS4D02G050800 , TraesCS5D02G516200 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS1D02G274400 , TraesCS1D02G020000 , TraesCS1B02G024500 , TraesCS4D02G050800 , TraesCS5B02G516100
Populus PNT13527 , PNT60125 , PNT60124 , PNT60123 , PNT22925 , PNT22924 , PNT22921 , PNT22923 , PNT22922


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cDNA sequences
Sobic.009G153000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
2 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
3 Sobic.003G266900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@DNA binding protein, putative, expressed -
4 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
5 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
6 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
7 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
8 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
9 Sobic.002G346400 transmembrane protein 49, putative, expressed -
10 Sobic.003G246100 AMSH-like protease, putative, expressed K11866: STAMBP, STAM-binding protein
11 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
12 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
13 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
14 Sobic.001G440600 expressed protein -
15 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
16 Sobic.001G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
17 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
18 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
19 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
20 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -


Gene co-expression network
sample Sobic009G153000 Sobic009G153000 Sobic005G231900 Sobic005G231900 Sobic009G153000--Sobic005G231900 Sobic006G271200 Sobic006G271200 Sobic009G153000--Sobic006G271200 Sobic003G266900 Sobic003G266900 Sobic009G153000--Sobic003G266900 Sobic009G208100 Sobic009G208100 Sobic009G153000--Sobic009G208100 Sobic003G289900 Sobic003G289900 Sobic009G153000--Sobic003G289900 Sobic003G269800 Sobic003G269800 Sobic009G153000--Sobic003G269800 Sobic004G162400 Sobic004G162400 Sobic009G153000--Sobic004G162400 Sobic001G395700 Sobic001G395700 Sobic009G153000--Sobic001G395700 Sobic002G346400 Sobic002G346400 Sobic009G153000--Sobic002G346400 Sobic005G231900--Sobic004G162400 Sobic001G488500 Sobic001G488500 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic002G304000 Sobic002G304000 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic005G231900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic006G271200--Sobic001G003000 Sobic006G237900 Sobic006G237900 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic003G266900--Sobic009G153000 Sobic003G266900--Sobic009G208100 Sobic004G004200 Sobic004G004200 Sobic003G266900--Sobic004G004200 Sobic006G126500 Sobic006G126500 Sobic003G266900--Sobic006G126500 Sobic001G251200 Sobic001G251200 Sobic003G266900--Sobic001G251200 Sobic001G095500 Sobic001G095500 Sobic003G266900--Sobic001G095500 Sobic003G266900--Sobic003G269800 Sobic007G180600 Sobic007G180600 Sobic003G266900--Sobic007G180600 Sobic003G005600 Sobic003G005600 Sobic003G266900--Sobic003G005600 Sobic002G313900 Sobic002G313900 Sobic009G208100--Sobic002G313900 Sobic003G284000 Sobic003G284000 Sobic009G208100--Sobic003G284000 Sobic003G084000 Sobic003G084000 Sobic009G208100--Sobic003G084000 Sobic001G478800 Sobic001G478800 Sobic009G208100--Sobic001G478800 Sobic001G477700 Sobic001G477700 Sobic009G208100--Sobic001G477700 Sobic006G139100 Sobic006G139100 Sobic009G208100--Sobic006G139100 Sobic009G208100--Sobic010G072800 Sobic001G375600 Sobic001G375600 Sobic009G208100--Sobic001G375600 Sobic004G228800 Sobic004G228800 Sobic009G208100--Sobic004G228800 Sobic002G225300 Sobic002G225300 Sobic003G289900--Sobic002G225300 Sobic003G289900--Sobic009G153000 Sobic003G033000 Sobic003G033000 Sobic003G289900--Sobic003G033000 Sobic004G353600 Sobic004G353600 Sobic003G289900--Sobic004G353600 Sobic009G179600 Sobic009G179600 Sobic003G289900--Sobic009G179600 Sobic003G332000 Sobic003G332000 Sobic003G289900--Sobic003G332000 Sobic009G118600 Sobic009G118600 Sobic003G289900--Sobic009G118600 Sobic003G197300 Sobic003G197300 Sobic003G289900--Sobic003G197300 Sobic004G039300 Sobic004G039300 Sobic003G289900--Sobic004G039300 Sobic003G269800--Sobic009G118600 Sobic001G217400 Sobic001G217400 Sobic003G269800--Sobic001G217400 Sobic004G124500 Sobic004G124500 Sobic003G269800--Sobic004G124500 Sobic001G409300 Sobic001G409300 Sobic003G269800--Sobic001G409300 Sobic007G056600 Sobic007G056600 Sobic003G269800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic003G269800--Sobic003G126300 Sobic001G399800 Sobic001G399800 Sobic003G269800--Sobic001G399800 Sobic004G211900 Sobic004G211900 Sobic003G269800--Sobic004G211900 Sobic003G281900 Sobic003G281900 Sobic003G269800--Sobic003G281900 Sobic004G162400--Sobic005G216000 Sobic004G162400--Sobic002G304000 Sobic004G162400--Sobic005G231900 Sobic004G162400--Sobic004G101900 Sobic009G161000 Sobic009G161000 Sobic004G162400--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic004G162400--Sobic009G126900 Sobic001G015500 Sobic001G015500 Sobic004G162400--Sobic001G015500 Sobic002G058500 Sobic002G058500 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic002G215700 Sobic002G215700 Sobic001G395700--Sobic002G215700 Sobic006G139000 Sobic006G139000 Sobic001G395700--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic001G395700--Sobic004G101900 Sobic001G395700--Sobic005G231900 Sobic003G226200 Sobic003G226200 Sobic001G395700--Sobic003G226200 Sobic002G346400--Sobic001G436900 Sobic002G346400--Sobic010G072800 Sobic008G144900 Sobic008G144900 Sobic002G346400--Sobic008G144900 Sobic001G430400 Sobic001G430400 Sobic002G346400--Sobic001G430400 Sobic002G346400--Sobic006G126500 Sobic003G089000 Sobic003G089000 Sobic002G346400--Sobic003G089000 Sobic003G246100 Sobic003G246100 Sobic002G346400--Sobic003G246100 Sobic007G000200 Sobic007G000200 Sobic002G346400--Sobic007G000200 Sobic006G004500 Sobic006G004500 Sobic002G346400--Sobic006G004500
Octagon: transcription factors


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