Gene annotation
Transcriptome id Sobic.001G008600.1
Synonym NPC4, Sb01g000860
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
phosphoesterase family protein, putative, expressed
UniProt C5WS12
Pfam PF04185
Panther DB PTHR31956 PTHR31956:SF1
NCBI CDD -
KEGG Orthology K01114; phospholipase C
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT3G03530 : non-specific phospholipase C4
RAP-DB (Rice) LOC_Os03g63580.1 : phosphoesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a025938 , Zm00025a009080 , Zm00025a006851
Brachypodium KQK11606 , KQK12039
Barley HORVU0Hr1G035440.2 , HORVU0Hr1G022730.1 , HORVU0Hr1G022730.2 , HORVU0Hr1G022730.3 , HORVU1Hr1G085090.2 , HORVU1Hr1G085090.1 , HORVU0Hr1G035440.3 , HORVU0Hr1G035440.1 , HORVU0Hr1G030870.1 , HORVU0Hr1G030870.2 , HORVU0Hr1G030870.3
Wheat TraesCS4D02G013500 , TraesCS4A02G298300 , TraesCS4B02G015300
Populus -


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cDNA sequences
Sobic.001G008600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G164800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
2 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
4 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
5 Sobic.002G017400 expressed protein -
6 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
7 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
8 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
9 Sobic.002G409500 lipase precursor, putative, expressed -
10 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
11 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
12 Sobic.007G048600 berberine and berberine like domain containing protein, expressed -
13 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
14 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
15 Sobic.006G100332 - -
16 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
17 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
18 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
19 Sobic.009G212600 expressed protein K00294: 1-pyrroline-5-carboxylate dehydrogenase
20 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G008600 Sobic001G008600 Sobic008G164800 Sobic008G164800 Sobic001G008600--Sobic008G164800 Sobic006G100400 Sobic006G100400 Sobic001G008600--Sobic006G100400 Sobic007G041400 Sobic007G041400 Sobic001G008600--Sobic007G041400 Sobic006G139000 Sobic006G139000 Sobic001G008600--Sobic006G139000 Sobic002G017400 Sobic002G017400 Sobic001G008600--Sobic002G017400 Sobic003G226200 Sobic003G226200 Sobic001G008600--Sobic003G226200 Sobic001G227800 Sobic001G227800 Sobic001G008600--Sobic001G227800 Sobic002G058500 Sobic002G058500 Sobic001G008600--Sobic002G058500 Sobic002G409500 Sobic002G409500 Sobic001G008600--Sobic002G409500 Sobic004G320600 Sobic004G320600 Sobic008G164800--Sobic004G320600 Sobic004G321800 Sobic004G321800 Sobic008G164800--Sobic004G321800 Sobic006G226400 Sobic006G226400 Sobic008G164800--Sobic006G226400 Sobic006G100332 Sobic006G100332 Sobic008G164800--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic008G164800--Sobic003G087200 Sobic006G181300 Sobic006G181300 Sobic008G164800--Sobic006G181300 Sobic007G068100 Sobic007G068100 Sobic008G164800--Sobic007G068100 Sobic007G186200 Sobic007G186200 Sobic008G164800--Sobic007G186200 Sobic003G388251 Sobic003G388251 Sobic008G164800--Sobic003G388251 Sobic003G269700 Sobic003G269700 Sobic006G100400--Sobic003G269700 Sobic003G219600 Sobic003G219600 Sobic006G100400--Sobic003G219600 Sobic001G483500 Sobic001G483500 Sobic006G100400--Sobic001G483500 Sobic005G151700 Sobic005G151700 Sobic006G100400--Sobic005G151700 Sobic003G259200 Sobic003G259200 Sobic006G100400--Sobic003G259200 Sobic001G251900 Sobic001G251900 Sobic006G100400--Sobic001G251900 Sobic004G255000 Sobic004G255000 Sobic006G100400--Sobic004G255000 Sobic006G100400--Sobic002G409500 Sobic010G098100 Sobic010G098100 Sobic006G100400--Sobic010G098100 Sobic001G488500 Sobic001G488500 Sobic007G041400--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic007G041400--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic007G041400--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic007G041400--Sobic010G107000 Sobic002G215700 Sobic002G215700 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic009G211400 Sobic009G211400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic001G280000 Sobic001G280000 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic002G017400--Sobic001G008600 Sobic010G112200 Sobic010G112200 Sobic002G017400--Sobic010G112200 Sobic002G017400--Sobic006G100400 Sobic002G017400--Sobic007G041400 Sobic010G097300 Sobic010G097300 Sobic002G017400--Sobic010G097300 Sobic010G195800 Sobic010G195800 Sobic002G017400--Sobic010G195800 Sobic002G356000 Sobic002G356000 Sobic002G017400--Sobic002G356000 Sobic008G126000 Sobic008G126000 Sobic002G017400--Sobic008G126000 Sobic001G467600 Sobic001G467600 Sobic002G017400--Sobic001G467600 Sobic009G234800 Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic003G226200--Sobic002G058500 Sobic003G226200--Sobic005G079900 Sobic003G226200--Sobic007G041400 Sobic001G265600 Sobic001G265600 Sobic003G226200--Sobic001G265600 Sobic002G415900 Sobic002G415900 Sobic003G226200--Sobic002G415900 Sobic003G226200--Sobic007G068100 Sobic003G226200--Sobic002G215700 Sobic003G226200--Sobic004G101900 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic001G227800--Sobic006G100332 Sobic001G227800--Sobic003G219600 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic002G058500--Sobic001G280000 Sobic009G029600 Sobic009G029600 Sobic002G409500--Sobic009G029600 Sobic002G409500--Sobic003G219600 Sobic002G409500--Sobic009G211400 Sobic001G280200 Sobic001G280200 Sobic002G409500--Sobic001G280200 Sobic001G249300 Sobic001G249300 Sobic002G409500--Sobic001G249300 Sobic003G257100 Sobic003G257100 Sobic002G409500--Sobic003G257100 Sobic002G409500--Sobic004G255000 Sobic002G215800 Sobic002G215800 Sobic002G409500--Sobic002G215800 Sobic002G409500--Sobic003G259200
Octagon: transcription factors


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