Gene annotation
Transcriptome id Sobic.007G048600.1
Synonym Sb07g003960
Functional annotation berberine and berberine like domain containing protein, expressed
UniProt A0A1B6PFX6
Pfam PF01565 PF08031
Panther DB PTHR32448 PTHR32448:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G34790 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os08g06190.1 : berberine and berberine like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048836 , Zm00025a055130
Brachypodium KQJ81772 , PNT66736
Barley HORVU7Hr1G089160.4 , HORVU7Hr1G089160.1 , HORVU7Hr1G089160.3 , HORVU7Hr1G089160.2 , HORVU2Hr1G008310.2 , HORVU1Hr1G091500.1 , HORVU1Hr1G091500.2 , HORVU2Hr1G008270.1 , HORVU2Hr1G008310.1 , HORVU2Hr1G008310.3 , HORVU2Hr1G008310.4 , HORVU2Hr1G008300.1
Wheat TraesCS7A02G354100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
2 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
4 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
5 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
6 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
7 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
8 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
9 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
10 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
11 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
12 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
15 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
17 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
18 Sobic.002G409500 lipase precursor, putative, expressed -
19 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic007G048600 Sobic007G048600 Sobic003G219600 Sobic003G219600 Sobic007G048600--Sobic003G219600 Sobic006G100400 Sobic006G100400 Sobic007G048600--Sobic006G100400 Sobic001G249300 Sobic001G249300 Sobic007G048600--Sobic001G249300 Sobic007G041400 Sobic007G041400 Sobic007G048600--Sobic007G041400 Sobic009G054500 Sobic009G054500 Sobic007G048600--Sobic009G054500 Sobic004G255000 Sobic004G255000 Sobic007G048600--Sobic004G255000 Sobic005G018500 Sobic005G018500 Sobic007G048600--Sobic005G018500 Sobic001G280200 Sobic001G280200 Sobic007G048600--Sobic001G280200 Sobic001G162700 Sobic001G162700 Sobic007G048600--Sobic001G162700 Sobic009G211400 Sobic009G211400 Sobic003G219600--Sobic009G211400 Sobic009G029600 Sobic009G029600 Sobic003G219600--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic003G219600--Sobic003G259200 Sobic003G219600--Sobic009G054500 Sobic003G219600--Sobic005G018500 Sobic003G219600--Sobic004G255000 Sobic003G219600--Sobic001G249300 Sobic004G260000 Sobic004G260000 Sobic003G219600--Sobic004G260000 Sobic009G226300 Sobic009G226300 Sobic003G219600--Sobic009G226300 Sobic003G269700 Sobic003G269700 Sobic006G100400--Sobic003G269700 Sobic006G100400--Sobic003G219600 Sobic001G483500 Sobic001G483500 Sobic006G100400--Sobic001G483500 Sobic005G151700 Sobic005G151700 Sobic006G100400--Sobic005G151700 Sobic006G100400--Sobic003G259200 Sobic001G251900 Sobic001G251900 Sobic006G100400--Sobic001G251900 Sobic006G100400--Sobic004G255000 Sobic002G409500 Sobic002G409500 Sobic006G100400--Sobic002G409500 Sobic010G098100 Sobic010G098100 Sobic006G100400--Sobic010G098100 Sobic001G249300--Sobic001G280200 Sobic001G249300--Sobic009G226300 Sobic001G249300--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G249300--Sobic007G187300 Sobic003G138200 Sobic003G138200 Sobic001G249300--Sobic003G138200 Sobic006G030700 Sobic006G030700 Sobic001G249300--Sobic006G030700 Sobic001G249300--Sobic004G255000 Sobic001G249300--Sobic003G259200 Sobic001G249300--Sobic009G029600 Sobic001G488500 Sobic001G488500 Sobic007G041400--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic007G041400--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic007G041400--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic007G041400--Sobic010G107000 Sobic002G215700 Sobic002G215700 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic003G148800 Sobic003G148800 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic006G100332 Sobic006G100332 Sobic009G054500--Sobic006G100332 Sobic009G054500--Sobic002G215700 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G255000--Sobic004G260000 Sobic004G255000--Sobic003G219600 Sobic005G152100 Sobic005G152100 Sobic004G255000--Sobic005G152100 Sobic005G018500--Sobic009G054500 Sobic005G018500--Sobic004G260000 Sobic005G018500--Sobic004G255000 Sobic005G018500--Sobic003G259200 Sobic005G018500--Sobic009G226300 Sobic005G018500--Sobic001G249300 Sobic005G018500--Sobic003G148800 Sobic005G018500--Sobic003G219600 Sobic005G018500--Sobic007G187300 Sobic001G280200--Sobic001G249300 Sobic001G280200--Sobic009G029600 Sobic001G280200--Sobic006G030700 Sobic001G280200--Sobic004G255000 Sobic001G280200--Sobic009G226300 Sobic001G280200--Sobic007G187300 Sobic001G280200--Sobic009G054500 Sobic001G280200--Sobic001G162700 Sobic001G150600 Sobic001G150600 Sobic001G280200--Sobic001G150600 Sobic001G162700--Sobic001G280200 Sobic001G162700--Sobic001G249300 Sobic001G162700--Sobic010G098100 Sobic001G162700--Sobic009G029600 Sobic001G162700--Sobic003G259200 Sobic001G162700--Sobic004G255000 Sobic001G162700--Sobic001G483500 Sobic001G162700--Sobic006G030700 Sobic001G412700 Sobic001G412700 Sobic001G162700--Sobic001G412700
Octagon: transcription factors


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