Gene annotation
Transcriptome id Sobic.004G009000.1
Synonym Sb04g000950
Functional annotation expressed protein
UniProt A0A1Z5RKE6
Pfam PF00271 PF09369 PF00270
Panther DB PTHR24031 PTHR24031:SF252
NCBI CDD -
KEGG Orthology K06877; DEAD/DEAH box helicase domain-containing protein
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G08110 : nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
RAP-DB (Rice) LOC_Os02g02150.1 : ATP-dependent helicase HRQ1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92866
Barley HORVU4Hr1G082260.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G133850 - -
2 Sobic.006G118800 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.003G347100 - -
4 Sobic.004G228400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding protein, putative, expressed -
5 Sobic.001G080200 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.002G220700 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659855)@expressed protein -
7 Sobic.009G088700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cellulase, putative, expressed -
8 Sobic.007G129000 nucleobase-ascorbate transporter, putative, expressed -
9 Sobic.010G224400 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
10 Sobic.004G238700 CSLA6 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
11 Sobic.010G105050 - -
12 Sobic.004G314900 expressed protein -
13 Sobic.001G123300 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed K05350: beta-glucosidase
14 Sobic.010G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
15 Sobic.005G186400 patatin, putative, expressed -
16 Sobic.001G081100 OsSub31 - Putative Subtilisin homologue, expressed -
17 Sobic.010G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
18 Sobic.006G212400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@QRT3, putative, expressed -
19 Sobic.010G261000 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.001G033300 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic004G009000 Sobic004G009000 Sobic007G133850 Sobic007G133850 Sobic004G009000--Sobic007G133850 Sobic006G118800 Sobic006G118800 Sobic004G009000--Sobic006G118800 Sobic003G347100 Sobic003G347100 Sobic004G009000--Sobic003G347100 Sobic004G228400 Sobic004G228400 Sobic004G009000--Sobic004G228400 Sobic001G080200 Sobic001G080200 Sobic004G009000--Sobic001G080200 Sobic002G220700 Sobic002G220700 Sobic004G009000--Sobic002G220700 Sobic009G088700 Sobic009G088700 Sobic004G009000--Sobic009G088700 Sobic007G129000 Sobic007G129000 Sobic004G009000--Sobic007G129000 Sobic010G224400 Sobic010G224400 Sobic004G009000--Sobic010G224400 Sobic002G027300 Sobic002G027300 Sobic007G133850--Sobic002G027300 Sobic002G032100 Sobic002G032100 Sobic007G133850--Sobic002G032100 Sobic006G068200 Sobic006G068200 Sobic007G133850--Sobic006G068200 Sobic004G215400 Sobic004G215400 Sobic007G133850--Sobic004G215400 Sobic005G180000 Sobic005G180000 Sobic007G133850--Sobic005G180000 Sobic004G215500 Sobic004G215500 Sobic007G133850--Sobic004G215500 Sobic001G273200 Sobic001G273200 Sobic007G133850--Sobic001G273200 Sobic005G179800 Sobic005G179800 Sobic007G133850--Sobic005G179800 Sobic009G223800 Sobic009G223800 Sobic007G133850--Sobic009G223800 Sobic001G266300 Sobic001G266300 Sobic006G118800--Sobic001G266300 Sobic004G316200 Sobic004G316200 Sobic006G118800--Sobic004G316200 Sobic010G191301 Sobic010G191301 Sobic006G118800--Sobic010G191301 Sobic008G182100 Sobic008G182100 Sobic006G118800--Sobic008G182100 Sobic002G332500 Sobic002G332500 Sobic006G118800--Sobic002G332500 Sobic003G330800 Sobic003G330800 Sobic006G118800--Sobic003G330800 Sobic010G258900 Sobic010G258900 Sobic006G118800--Sobic010G258900 Sobic003G139400 Sobic003G139400 Sobic006G118800--Sobic003G139400 Sobic003G129100 Sobic003G129100 Sobic006G118800--Sobic003G129100 Sobic003G347100--Sobic005G180000 Sobic003G347100--Sobic005G179800 Sobic006G185600 Sobic006G185600 Sobic003G347100--Sobic006G185600 Sobic003G347100--Sobic001G273200 Sobic007G043300 Sobic007G043300 Sobic003G347100--Sobic007G043300 Sobic003G347100--Sobic004G215400 Sobic003G347100--Sobic006G068200 Sobic010G038400 Sobic010G038400 Sobic003G347100--Sobic010G038400 Sobic005G118700 Sobic005G118700 Sobic003G347100--Sobic005G118700 Sobic006G104300 Sobic006G104300 Sobic004G228400--Sobic006G104300 Sobic003G025900 Sobic003G025900 Sobic004G228400--Sobic003G025900 Sobic001G395700 Sobic001G395700 Sobic004G228400--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic004G228400--Sobic005G019800 Sobic001G023200 Sobic001G023200 Sobic004G228400--Sobic001G023200 Sobic010G168200 Sobic010G168200 Sobic004G228400--Sobic010G168200 Sobic007G106900 Sobic007G106900 Sobic004G228400--Sobic007G106900 Sobic003G009100 Sobic003G009100 Sobic004G228400--Sobic003G009100 Sobic009G122600 Sobic009G122600 Sobic004G228400--Sobic009G122600 Sobic003G283600 Sobic003G283600 Sobic001G080200--Sobic003G283600 Sobic001G123100 Sobic001G123100 Sobic001G080200--Sobic001G123100 Sobic006G133700 Sobic006G133700 Sobic001G080200--Sobic006G133700 Sobic001G452900 Sobic001G452900 Sobic001G080200--Sobic001G452900 Sobic001G083500 Sobic001G083500 Sobic001G080200--Sobic001G083500 Sobic002G337600 Sobic002G337600 Sobic001G080200--Sobic002G337600 Sobic010G241100 Sobic010G241100 Sobic001G080200--Sobic010G241100 Sobic010G086000 Sobic010G086000 Sobic001G080200--Sobic010G086000 Sobic002G284100 Sobic002G284100 Sobic001G080200--Sobic002G284100 Sobic002G220700--Sobic009G088700 Sobic003G091550 Sobic003G091550 Sobic002G220700--Sobic003G091550 Sobic001G015700 Sobic001G015700 Sobic002G220700--Sobic001G015700 Sobic006G122300 Sobic006G122300 Sobic002G220700--Sobic006G122300 Sobic004G072900 Sobic004G072900 Sobic002G220700--Sobic004G072900 Sobic003G078400 Sobic003G078400 Sobic002G220700--Sobic003G078400 Sobic003G274000 Sobic003G274000 Sobic002G220700--Sobic003G274000 Sobic003G317700 Sobic003G317700 Sobic002G220700--Sobic003G317700 Sobic001G123300 Sobic001G123300 Sobic002G220700--Sobic001G123300 Sobic009G088700--Sobic002G220700 Sobic009G088700--Sobic001G083500 Sobic003G100700 Sobic003G100700 Sobic009G088700--Sobic003G100700 Sobic009G088700--Sobic001G015700 Sobic009G088700--Sobic003G078400 Sobic009G088700--Sobic003G091550 Sobic009G088700--Sobic006G068200 Sobic004G313200 Sobic004G313200 Sobic009G088700--Sobic004G313200 Sobic009G088700--Sobic006G122300 Sobic006G144700 Sobic006G144700 Sobic007G129000--Sobic006G144700 Sobic010G265900 Sobic010G265900 Sobic007G129000--Sobic010G265900 Sobic009G208900 Sobic009G208900 Sobic007G129000--Sobic009G208900 Sobic004G036800 Sobic004G036800 Sobic007G129000--Sobic004G036800 Sobic007G129000--Sobic001G080200 Sobic004G286700 Sobic004G286700 Sobic007G129000--Sobic004G286700 Sobic002G158900 Sobic002G158900 Sobic007G129000--Sobic002G158900 Sobic003G256900 Sobic003G256900 Sobic007G129000--Sobic003G256900 Sobic001G468500 Sobic001G468500 Sobic007G129000--Sobic001G468500 Sobic005G088200 Sobic005G088200 Sobic010G224400--Sobic005G088200 Sobic005G197700 Sobic005G197700 Sobic010G224400--Sobic005G197700 Sobic002G213500 Sobic002G213500 Sobic010G224400--Sobic002G213500 Sobic003G375300 Sobic003G375300 Sobic010G224400--Sobic003G375300 Sobic010G224400--Sobic007G043300 Sobic010G261000 Sobic010G261000 Sobic010G224400--Sobic010G261000 Sobic010G224400--Sobic006G118800 Sobic001G081100 Sobic001G081100 Sobic010G224400--Sobic001G081100 Sobic004G152300 Sobic004G152300 Sobic010G224400--Sobic004G152300
Octagon: transcription factors


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