Gene annotation
| Transcriptome id | Sobic.006G212400.2,Sobic.006G212400.1 |
|---|---|
| Synonym | Sb06g028280, QRT3 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) QRT3, putative, expressed |
| UniProt | A0A1Z5RFM7 , C5YFP6 |
| Pfam | PF12708 |
| Panther DB | PTHR33928 PTHR33928:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G20050 : Pectin lyase-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g52320.1 : QRT3, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009817 |
| Brachypodium | KQJ84552 |
| Barley | HORVU3Hr1G108840.1 , HORVU3Hr1G108740.1 , HORVU2Hr1G099290.3 , HORVU2Hr1G099290.2 , HORVU2Hr1G099290.1 , HORVU2Hr1G099290.7 , HORVU2Hr1G099290.6 , HORVU2Hr1G099290.5 , HORVU2Hr1G099290.4 , HORVU2Hr1G099290.8 |
| Wheat | TraesCS2A02G423900 , TraesCS2B02G443500 , TraesCS2D02G421700 |
| Populus | - |
JBrowse
| Sobic.006G212400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G139400 | expressed protein | - |
| 2 | Sobic.004G093400 | beta-galactosidase precursor, putative, expressed | - |
| 3 | Sobic.008G154801 | - | - |
| 4 | Sobic.002G160800 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 5 | Sobic.002G315500 | ankyrin repeat domain containing protein, expressed | - |
| 6 | Sobic.005G004000 | MYB family transcription factor, putative, expressed | - |
| 7 | Sobic.003G095500 | glycosyltransferase, putative, expressed | - |
| 8 | Sobic.001G123100 | Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed | K05350: beta-glucosidase |
| 9 | Sobic.001G080200 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.010G087800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.007G043300 | monocopper oxidase, putative, expressed | - |
| 12 | Sobic.001G439000 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 13 | Sobic.003G214900 | inactive receptor kinase At2g26730 precursor, putative, expressed | - |
| 14 | Sobic.007G129000 | nucleobase-ascorbate transporter, putative, expressed | - |
| 15 | Sobic.004G250600 | NHL repeat-containing protein, putative, expressed | - |
| 16 | Sobic.006G261200 | Trihelix Family(PubMedID : 24864043)@GL4(Ortholog in rice:Wu et al. (2017) )(PubMedID : 31659902)@transcription factor, putative, expressed | - |
| 17 | Sobic.001G083500 | plastocyanin-like domain containing protein, putative, expressed | - |
| 18 | Sobic.003G132500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@subtilisin-like protease, putative, expressed | - |
| 19 | Sobic.002G366000 | X8 domain containing protein, expressed | - |
| 20 | Sobic.003G220500 | TTL1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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