Gene annotation
Transcriptome id Sobic.002G160800.3,Sobic.002G160800.1,Sobic.002G160800.2
Synonym Sb02g020450
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0W4C2 , C5X8Y3 , A0A1W0W4E9
Pfam PF12678
Panther DB PTHR10579 PTHR10579:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G08050 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os09g12720.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046360
Brachypodium KQJ89761
Barley -
Wheat TraesCS5B02G176000 , TraesCS5D02G182800 , TraesCS5B02G176000 , TraesCS5A02G178300
Populus -


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cDNA sequences
Sobic.002G160800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G093400 beta-galactosidase precursor, putative, expressed -
2 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.001G083500 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.002G315500 ankyrin repeat domain containing protein, expressed -
5 Sobic.002G337600 expressed protein -
6 Sobic.002G404300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
8 Sobic.002G335900 cyclin, putative, expressed K18812: cyclin D6, plant
9 Sobic.009G005700 FYVE zinc finger domain containing protein, expressed -
10 Sobic.010G275800 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
11 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -
12 Sobic.003G095500 glycosyltransferase, putative, expressed -
13 Sobic.001G345200 OsFBX94 - F-box domain containing protein, expressed -
14 Sobic.003G360700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
15 Sobic.004G248100 endoglucanase, putative, expressed -
16 Sobic.002G419200 inactive receptor kinase At2g26730 precursor, putative, expressed -
17 Sobic.005G091000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
18 Sobic.003G374300 DNA binding protein, putative, expressed -
19 Sobic.006G212400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@QRT3, putative, expressed -
20 Sobic.003G300400 expressed protein -


Gene co-expression network
sample Sobic002G160800 Sobic002G160800 Sobic004G093400 Sobic004G093400 Sobic002G160800--Sobic004G093400 Sobic003G338200 Sobic003G338200 Sobic002G160800--Sobic003G338200 Sobic001G083500 Sobic001G083500 Sobic002G160800--Sobic001G083500 Sobic002G315500 Sobic002G315500 Sobic002G160800--Sobic002G315500 Sobic002G337600 Sobic002G337600 Sobic002G160800--Sobic002G337600 Sobic002G404300 Sobic002G404300 Sobic002G160800--Sobic002G404300 Sobic002G032500 Sobic002G032500 Sobic002G160800--Sobic002G032500 Sobic002G335900 Sobic002G335900 Sobic002G160800--Sobic002G335900 Sobic009G005700 Sobic009G005700 Sobic002G160800--Sobic009G005700 Sobic004G093400--Sobic002G160800 Sobic006G212400 Sobic006G212400 Sobic004G093400--Sobic006G212400 Sobic005G064100 Sobic005G064100 Sobic004G093400--Sobic005G064100 Sobic004G093400--Sobic009G005700 Sobic002G351700 Sobic002G351700 Sobic004G093400--Sobic002G351700 Sobic003G409600 Sobic003G409600 Sobic004G093400--Sobic003G409600 Sobic001G123100 Sobic001G123100 Sobic004G093400--Sobic001G123100 Sobic003G298900 Sobic003G298900 Sobic004G093400--Sobic003G298900 Sobic004G093400--Sobic003G338200 Sobic003G338200--Sobic002G032500 Sobic002G419200 Sobic002G419200 Sobic003G338200--Sobic002G419200 Sobic003G309400 Sobic003G309400 Sobic003G338200--Sobic003G309400 Sobic004G248100 Sobic004G248100 Sobic003G338200--Sobic004G248100 Sobic001G345200 Sobic001G345200 Sobic003G338200--Sobic001G345200 Sobic003G116100 Sobic003G116100 Sobic003G338200--Sobic003G116100 Sobic007G094200 Sobic007G094200 Sobic003G338200--Sobic007G094200 Sobic003G277200 Sobic003G277200 Sobic003G338200--Sobic003G277200 Sobic003G300400 Sobic003G300400 Sobic003G338200--Sobic003G300400 Sobic004G313200 Sobic004G313200 Sobic001G083500--Sobic004G313200 Sobic001G083500--Sobic002G335900 Sobic009G088700 Sobic009G088700 Sobic001G083500--Sobic009G088700 Sobic001G083500--Sobic002G337600 Sobic001G074000 Sobic001G074000 Sobic001G083500--Sobic001G074000 Sobic001G083500--Sobic002G160800 Sobic001G452900 Sobic001G452900 Sobic001G083500--Sobic001G452900 Sobic003G100700 Sobic003G100700 Sobic001G083500--Sobic003G100700 Sobic001G199400 Sobic001G199400 Sobic001G083500--Sobic001G199400 Sobic001G470200 Sobic001G470200 Sobic002G315500--Sobic001G470200 Sobic008G097700 Sobic008G097700 Sobic002G315500--Sobic008G097700 Sobic010G192500 Sobic010G192500 Sobic002G315500--Sobic010G192500 Sobic010G275800 Sobic010G275800 Sobic002G315500--Sobic010G275800 Sobic003G089300 Sobic003G089300 Sobic002G315500--Sobic003G089300 Sobic001G046400 Sobic001G046400 Sobic002G315500--Sobic001G046400 Sobic002G315500--Sobic002G337600 Sobic001G093000 Sobic001G093000 Sobic002G315500--Sobic001G093000 Sobic002G315500--Sobic002G404300 Sobic002G337600--Sobic010G192500 Sobic002G337600--Sobic001G046400 Sobic002G337600--Sobic002G335900 Sobic010G241100 Sobic010G241100 Sobic002G337600--Sobic010G241100 Sobic007G211200 Sobic007G211200 Sobic002G337600--Sobic007G211200 Sobic002G337600--Sobic002G032500 Sobic002G337600--Sobic003G089300 Sobic004G211700 Sobic004G211700 Sobic002G337600--Sobic004G211700 Sobic001G473500 Sobic001G473500 Sobic002G337600--Sobic001G473500 Sobic002G404300--Sobic002G335900 Sobic002G404300--Sobic002G032500 Sobic002G404300--Sobic002G337600 Sobic002G186800 Sobic002G186800 Sobic002G404300--Sobic002G186800 Sobic001G026800 Sobic001G026800 Sobic002G404300--Sobic001G026800 Sobic004G342000 Sobic004G342000 Sobic002G404300--Sobic004G342000 Sobic002G404300--Sobic004G211700 Sobic002G404300--Sobic003G300400 Sobic004G274600 Sobic004G274600 Sobic002G404300--Sobic004G274600 Sobic002G032500--Sobic003G309400 Sobic002G032500--Sobic007G094200 Sobic002G032500--Sobic003G300400 Sobic002G032500--Sobic007G211200 Sobic002G032500--Sobic004G211700 Sobic002G032500--Sobic003G089300 Sobic002G032500--Sobic004G248100 Sobic005G091000 Sobic005G091000 Sobic002G032500--Sobic005G091000 Sobic002G032500--Sobic003G338200 Sobic002G335900--Sobic002G337600 Sobic002G335900--Sobic002G404300 Sobic002G335900--Sobic010G192500 Sobic001G493900 Sobic001G493900 Sobic002G335900--Sobic001G493900 Sobic003G031700 Sobic003G031700 Sobic002G335900--Sobic003G031700 Sobic004G267600 Sobic004G267600 Sobic002G335900--Sobic004G267600 Sobic007G160300 Sobic007G160300 Sobic002G335900--Sobic007G160300 Sobic001G155700 Sobic001G155700 Sobic002G335900--Sobic001G155700 Sobic002G335900--Sobic001G083500 Sobic007G197100 Sobic007G197100 Sobic009G005700--Sobic007G197100 Sobic009G005700--Sobic003G298900 Sobic001G540700 Sobic001G540700 Sobic009G005700--Sobic001G540700 Sobic009G202801 Sobic009G202801 Sobic009G005700--Sobic009G202801 Sobic009G212100 Sobic009G212100 Sobic009G005700--Sobic009G212100 Sobic009G005700--Sobic001G026800 Sobic006G254500 Sobic006G254500 Sobic009G005700--Sobic006G254500 Sobic009G005700--Sobic003G409600 Sobic002G074000 Sobic002G074000 Sobic009G005700--Sobic002G074000
Octagon: transcription factors


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