Gene annotation
Transcriptome id Sobic.002G366000.1
Synonym PDCB3, Sb02g038510
Functional annotation X8 domain containing protein, expressed
UniProt C5XDT7
Pfam PF07983
Panther DB PTHR32227 PTHR32227:SF83
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18650 : plasmodesmata callose-binding protein 3
RAP-DB (Rice) LOC_Os07g40940.1 : X8 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052192 , Zm00025a015107 , Zm00025a048680
Brachypodium KQK15375
Barley -
Wheat TraesCS2D02G185800 , TraesCS2B02G204700 , TraesCS2A02G177600
Populus -


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cDNA sequences
Sobic.002G366000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G197100 expressed protein -
2 Sobic.002G315500 ankyrin repeat domain containing protein, expressed -
3 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
4 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
6 Sobic.001G093000 transferase family protein, putative, expressed -
7 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
8 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
9 Sobic.001G540700 expressed protein -
10 Sobic.008G097700 transmembrane amino acid transporter protein, putative, expressed -
11 Sobic.010G275800 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
12 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
13 Sobic.008G041900 expressed protein -
14 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
15 Sobic.008G154801 - -
16 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
17 Sobic.003G302000 expressed protein -
18 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
19 Sobic.002G335900 cyclin, putative, expressed K18812: cyclin D6, plant
20 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic002G366000 Sobic002G366000 Sobic007G197100 Sobic007G197100 Sobic002G366000--Sobic007G197100 Sobic002G315500 Sobic002G315500 Sobic002G366000--Sobic002G315500 Sobic009G254000 Sobic009G254000 Sobic002G366000--Sobic009G254000 Sobic001G470200 Sobic001G470200 Sobic002G366000--Sobic001G470200 Sobic006G066400 Sobic006G066400 Sobic002G366000--Sobic006G066400 Sobic001G093000 Sobic001G093000 Sobic002G366000--Sobic001G093000 Sobic005G032600 Sobic005G032600 Sobic002G366000--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic002G366000--Sobic001G468000 Sobic001G540700 Sobic001G540700 Sobic002G366000--Sobic001G540700 Sobic007G197100--Sobic002G366000 Sobic007G197100--Sobic001G540700 Sobic007G197100--Sobic009G254000 Sobic007G197100--Sobic005G032600 Sobic009G005700 Sobic009G005700 Sobic007G197100--Sobic009G005700 Sobic007G197100--Sobic002G315500 Sobic004G207000 Sobic004G207000 Sobic007G197100--Sobic004G207000 Sobic007G197100--Sobic001G470200 Sobic006G272800 Sobic006G272800 Sobic007G197100--Sobic006G272800 Sobic002G315500--Sobic001G470200 Sobic008G097700 Sobic008G097700 Sobic002G315500--Sobic008G097700 Sobic010G192500 Sobic010G192500 Sobic002G315500--Sobic010G192500 Sobic010G275800 Sobic010G275800 Sobic002G315500--Sobic010G275800 Sobic003G089300 Sobic003G089300 Sobic002G315500--Sobic003G089300 Sobic001G046400 Sobic001G046400 Sobic002G315500--Sobic001G046400 Sobic002G337600 Sobic002G337600 Sobic002G315500--Sobic002G337600 Sobic002G315500--Sobic001G093000 Sobic002G404300 Sobic002G404300 Sobic002G315500--Sobic002G404300 Sobic006G140300 Sobic006G140300 Sobic009G254000--Sobic006G140300 Sobic009G254000--Sobic007G197100 Sobic003G298900 Sobic003G298900 Sobic009G254000--Sobic003G298900 Sobic009G254000--Sobic002G366000 Sobic009G254000--Sobic001G540700 Sobic003G224700 Sobic003G224700 Sobic009G254000--Sobic003G224700 Sobic002G006100 Sobic002G006100 Sobic009G254000--Sobic002G006100 Sobic004G250600 Sobic004G250600 Sobic009G254000--Sobic004G250600 Sobic005G013300 Sobic005G013300 Sobic009G254000--Sobic005G013300 Sobic004G357000 Sobic004G357000 Sobic001G470200--Sobic004G357000 Sobic004G317200 Sobic004G317200 Sobic001G470200--Sobic004G317200 Sobic010G020600 Sobic010G020600 Sobic001G470200--Sobic010G020600 Sobic007G032100 Sobic007G032100 Sobic001G470200--Sobic007G032100 Sobic007G165800 Sobic007G165800 Sobic001G470200--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic001G470200--Sobic004G274600 Sobic001G470200--Sobic003G089300 Sobic001G470200--Sobic008G097700 Sobic001G434100 Sobic001G434100 Sobic001G470200--Sobic001G434100 Sobic006G066400--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic006G066400--Sobic003G022900 Sobic010G212700 Sobic010G212700 Sobic006G066400--Sobic010G212700 Sobic010G180200 Sobic010G180200 Sobic006G066400--Sobic010G180200 Sobic001G171100 Sobic001G171100 Sobic006G066400--Sobic001G171100 Sobic002G196500 Sobic002G196500 Sobic006G066400--Sobic002G196500 Sobic006G066400--Sobic002G366000 Sobic002G244600 Sobic002G244600 Sobic006G066400--Sobic002G244600 Sobic006G066400--Sobic006G272800 Sobic001G093000--Sobic007G165800 Sobic007G180200 Sobic007G180200 Sobic001G093000--Sobic007G180200 Sobic003G360700 Sobic003G360700 Sobic001G093000--Sobic003G360700 Sobic001G199400 Sobic001G199400 Sobic001G093000--Sobic001G199400 Sobic001G093000--Sobic002G315500 Sobic001G093000--Sobic004G274600 Sobic003G027100 Sobic003G027100 Sobic001G093000--Sobic003G027100 Sobic002G335900 Sobic002G335900 Sobic001G093000--Sobic002G335900 Sobic001G093000--Sobic001G470200 Sobic002G027600 Sobic002G027600 Sobic005G032600--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic005G032600--Sobic004G267600 Sobic001G079900 Sobic001G079900 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic005G032600--Sobic006G272800 Sobic001G493900 Sobic001G493900 Sobic005G032600--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic005G032600--Sobic008G151600 Sobic003G351900 Sobic003G351900 Sobic005G032600--Sobic003G351900 Sobic005G032600--Sobic007G032100 Sobic001G468000--Sobic006G066400 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G468000--Sobic001G171100 Sobic001G540700--Sobic002G284100 Sobic001G540700--Sobic007G197100 Sobic001G540700--Sobic004G207000 Sobic001G540700--Sobic004G267600 Sobic004G315700 Sobic004G315700 Sobic001G540700--Sobic004G315700 Sobic001G540700--Sobic006G272800 Sobic001G487200 Sobic001G487200 Sobic001G540700--Sobic001G487200 Sobic001G369800 Sobic001G369800 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000
Octagon: transcription factors


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