Gene annotation
Transcriptome id Sobic.001G468400.1
Synonym grassy tillers1, Sb01g043910, SbGT1, ATHB40, HB40, SbGT1;grassy tillers1, HB-5
Functional annotation Increased expression in phyB-1 mutant (PubMedID : 26893475)
Up-reguralion under drought (PubMedID : 24916767)
homeobox domain containing protein, expressed
UniProt C5WTV6
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF262
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G18550 : homeobox protein 21
RAP-DB (Rice) LOC_Os03g10210.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053163 , Zm00025a014128 , Zm00025a001186 , Zm00025a015018 , Zm00025a047342
Brachypodium KQK23097 , KQK23096
Barley HORVU4Hr1G078410.4 , HORVU4Hr1G078410.5 , HORVU4Hr1G078410.2 , HORVU4Hr1G078410.3 , HORVU6Hr1G072810.4 , HORVU4Hr1G070610.1 , HORVU4Hr1G070610.2 , HORVU4Hr1G070610.3 , HORVU4Hr1G070610.4 , HORVU4Hr1G070610.5 , HORVU4Hr1G070610.6 , HORVU4Hr1G070610.7 , HORVU6Hr1G072810.6 , HORVU6Hr1G072810.7 , HORVU6Hr1G072810.5 , HORVU6Hr1G072810.2 , HORVU6Hr1G072810.1
Wheat TraesCS6B02G321100 , TraesCS6D02G272000 , TraesCS6D02G272000 , TraesCS4B02G305300 , TraesCS4B02G261600 , TraesCS4A02G405800 , TraesCS4D02G303500 , TraesCS6A02G290800 , TraesCS4D02G261600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G175500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
2 Sobic.007G106900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoribonuclease Dicer, putative, expressed -
3 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
5 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
6 Sobic.007G009100 dehydrogenase, putative, expressed -
7 Sobic.004G074700 bZIP transcription factor domain containing protein, expressed -
8 Sobic.008G034500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
9 Sobic.006G240800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@myosin-Ie, putative, expressed -
10 Sobic.004G228400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding protein, putative, expressed -
11 Sobic.003G068000 expressed protein -
12 Sobic.009G122600 LRP1, putative, expressed -
13 Sobic.006G196200 expressed protein -
14 Sobic.002G113300 expressed protein -
15 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
16 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
17 Sobic.010G072300 sucrose synthase(PubMedID : 26616172)@"Sh1(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659931)@sucrose synthase, putative, expressed K00695: sucrose synthase
18 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
19 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
20 Sobic.004G349175 - K14509: ETR, ethylene receptor


Gene co-expression network
sample Sobic001G468400 Sobic001G468400 Sobic002G175500 Sobic002G175500 Sobic001G468400--Sobic002G175500 Sobic007G106900 Sobic007G106900 Sobic001G468400--Sobic007G106900 Sobic002G258100 Sobic002G258100 Sobic001G468400--Sobic002G258100 Sobic002G249000 Sobic002G249000 Sobic001G468400--Sobic002G249000 Sobic001G023200 Sobic001G023200 Sobic001G468400--Sobic001G023200 Sobic007G009100 Sobic007G009100 Sobic001G468400--Sobic007G009100 Sobic004G074700 Sobic004G074700 Sobic001G468400--Sobic004G074700 Sobic008G034500 Sobic008G034500 Sobic001G468400--Sobic008G034500 Sobic006G240800 Sobic006G240800 Sobic001G468400--Sobic006G240800 Sobic002G175500--Sobic002G258100 Sobic001G393800 Sobic001G393800 Sobic002G175500--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic002G175500--Sobic008G107500 Sobic002G175500--Sobic001G023200 Sobic009G177400 Sobic009G177400 Sobic002G175500--Sobic009G177400 Sobic006G157700 Sobic006G157700 Sobic002G175500--Sobic006G157700 Sobic001G010400 Sobic001G010400 Sobic002G175500--Sobic001G010400 Sobic001G253600 Sobic001G253600 Sobic002G175500--Sobic001G253600 Sobic003G009100 Sobic003G009100 Sobic002G175500--Sobic003G009100 Sobic007G106900--Sobic001G023200 Sobic007G106900--Sobic002G249000 Sobic006G192700 Sobic006G192700 Sobic007G106900--Sobic006G192700 Sobic001G085900 Sobic001G085900 Sobic007G106900--Sobic001G085900 Sobic008G179500 Sobic008G179500 Sobic007G106900--Sobic008G179500 Sobic009G003900 Sobic009G003900 Sobic007G106900--Sobic009G003900 Sobic007G106900--Sobic003G009100 Sobic006G196200 Sobic006G196200 Sobic007G106900--Sobic006G196200 Sobic007G106900--Sobic001G393800 Sobic002G258100--Sobic002G175500 Sobic002G258100--Sobic008G107500 Sobic010G144400 Sobic010G144400 Sobic002G258100--Sobic010G144400 Sobic002G258100--Sobic001G010400 Sobic002G258100--Sobic001G023200 Sobic002G258100--Sobic001G253600 Sobic001G056700 Sobic001G056700 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic002G258100--Sobic001G393800 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic001G023200--Sobic003G009100 Sobic001G023200--Sobic002G258100 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic001G023200--Sobic007G106900 Sobic007G078100 Sobic007G078100 Sobic007G009100--Sobic007G078100 Sobic001G201100 Sobic001G201100 Sobic007G009100--Sobic001G201100 Sobic010G080500 Sobic010G080500 Sobic007G009100--Sobic010G080500 Sobic004G276100 Sobic004G276100 Sobic007G009100--Sobic004G276100 Sobic007G009100--Sobic001G010400 Sobic004G166500 Sobic004G166500 Sobic007G009100--Sobic004G166500 Sobic002G231600 Sobic002G231600 Sobic007G009100--Sobic002G231600 Sobic010G072300 Sobic010G072300 Sobic007G009100--Sobic010G072300 Sobic004G069200 Sobic004G069200 Sobic007G009100--Sobic004G069200 Sobic007G219900 Sobic007G219900 Sobic004G074700--Sobic007G219900 Sobic006G127100 Sobic006G127100 Sobic004G074700--Sobic006G127100 Sobic003G366400 Sobic003G366400 Sobic004G074700--Sobic003G366400 Sobic001G447500 Sobic001G447500 Sobic004G074700--Sobic001G447500 Sobic004G169700 Sobic004G169700 Sobic004G074700--Sobic004G169700 Sobic003G241000 Sobic003G241000 Sobic004G074700--Sobic003G241000 Sobic004G074700--Sobic003G009100 Sobic006G052100 Sobic006G052100 Sobic004G074700--Sobic006G052100 Sobic005G018500 Sobic005G018500 Sobic004G074700--Sobic005G018500 Sobic001G401300 Sobic001G401300 Sobic008G034500--Sobic001G401300 Sobic003G152100 Sobic003G152100 Sobic008G034500--Sobic003G152100 Sobic002G367400 Sobic002G367400 Sobic008G034500--Sobic002G367400 Sobic002G333900 Sobic002G333900 Sobic008G034500--Sobic002G333900 Sobic001G400700 Sobic001G400700 Sobic008G034500--Sobic001G400700 Sobic001G466000 Sobic001G466000 Sobic008G034500--Sobic001G466000 Sobic002G328300 Sobic002G328300 Sobic008G034500--Sobic002G328300 Sobic003G349600 Sobic003G349600 Sobic008G034500--Sobic003G349600 Sobic009G143400 Sobic009G143400 Sobic008G034500--Sobic009G143400 Sobic006G140000 Sobic006G140000 Sobic006G240800--Sobic006G140000 Sobic006G240800--Sobic002G258100 Sobic004G054300 Sobic004G054300 Sobic006G240800--Sobic004G054300 Sobic002G263800 Sobic002G263800 Sobic006G240800--Sobic002G263800 Sobic001G227500 Sobic001G227500 Sobic006G240800--Sobic001G227500 Sobic009G088100 Sobic009G088100 Sobic006G240800--Sobic009G088100 Sobic006G240800--Sobic001G010400 Sobic004G335000 Sobic004G335000 Sobic006G240800--Sobic004G335000 Sobic002G202400 Sobic002G202400 Sobic006G240800--Sobic002G202400
Octagon: transcription factors


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