Gene annotation
Transcriptome id Sobic.007G106900.1
Synonym Sb07g015020, ATRTL1, RTL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endoribonuclease Dicer, putative, expressed
UniProt C5YK89
Pfam PF00035 PF00636
Panther DB PTHR14950 PTHR14950:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006396; RNA processing GO:0004525ribonuclease III activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G15417 : RNAse II-like 1
RAP-DB (Rice) LOC_Os06g25250.1 : endoribonuclease Dicer, putative, expressed
MaizeGDB (Corn) Zm00025a006178
Brachypodium -
Barley HORVU7Hr1G082860.1 , HORVU7Hr1G082860.3 , HORVU7Hr1G082860.2 , HORVU7Hr1G082860.4
Wheat TraesCS7B02G248100 , TraesCS7D02G344100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
2 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
3 Sobic.006G192700 expressed protein -
4 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
5 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
6 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
7 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
8 Sobic.006G196200 expressed protein -
9 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
10 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
11 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
12 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
13 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
14 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
17 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
18 Sobic.004G277000 purine permease, putative, expressed -
19 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
20 Sobic.006G091100 expressed protein -


Gene co-expression network
sample Sobic007G106900 Sobic007G106900 Sobic001G023200 Sobic001G023200 Sobic007G106900--Sobic001G023200 Sobic002G249000 Sobic002G249000 Sobic007G106900--Sobic002G249000 Sobic006G192700 Sobic006G192700 Sobic007G106900--Sobic006G192700 Sobic001G085900 Sobic001G085900 Sobic007G106900--Sobic001G085900 Sobic008G179500 Sobic008G179500 Sobic007G106900--Sobic008G179500 Sobic009G003900 Sobic009G003900 Sobic007G106900--Sobic009G003900 Sobic003G009100 Sobic003G009100 Sobic007G106900--Sobic003G009100 Sobic006G196200 Sobic006G196200 Sobic007G106900--Sobic006G196200 Sobic001G393800 Sobic001G393800 Sobic007G106900--Sobic001G393800 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G010400 Sobic001G010400 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic001G023200--Sobic007G106900 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic001G057800 Sobic001G057800 Sobic006G192700--Sobic001G057800 Sobic010G064600 Sobic010G064600 Sobic006G192700--Sobic010G064600 Sobic008G093000 Sobic008G093000 Sobic006G192700--Sobic008G093000 Sobic004G006200 Sobic004G006200 Sobic006G192700--Sobic004G006200 Sobic001G003000 Sobic001G003000 Sobic006G192700--Sobic001G003000 Sobic009G207000 Sobic009G207000 Sobic006G192700--Sobic009G207000 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G158500 Sobic001G158500 Sobic001G085900--Sobic001G158500 Sobic002G083266 Sobic002G083266 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic004G276100 Sobic004G276100 Sobic008G179500--Sobic004G276100 Sobic009G111600 Sobic009G111600 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic009G003900--Sobic004G277000 Sobic009G003900--Sobic002G249000 Sobic009G003900--Sobic004G050000 Sobic009G003900--Sobic005G117400 Sobic002G264400 Sobic002G264400 Sobic009G003900--Sobic002G264400 Sobic001G184000 Sobic001G184000 Sobic009G003900--Sobic001G184000 Sobic002G090200 Sobic002G090200 Sobic009G003900--Sobic002G090200 Sobic009G003900--Sobic002G180600 Sobic010G072000 Sobic010G072000 Sobic009G003900--Sobic010G072000 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic003G009100--Sobic004G203100 Sobic003G009100--Sobic006G192700 Sobic002G333900 Sobic002G333900 Sobic006G196200--Sobic002G333900 Sobic008G034500 Sobic008G034500 Sobic006G196200--Sobic008G034500 Sobic001G401300 Sobic001G401300 Sobic006G196200--Sobic001G401300 Sobic006G196200--Sobic002G249000 Sobic002G328300 Sobic002G328300 Sobic006G196200--Sobic002G328300 Sobic006G196200--Sobic004G276100 Sobic006G196200--Sobic010G176700 Sobic003G215800 Sobic003G215800 Sobic006G196200--Sobic003G215800 Sobic007G009100 Sobic007G009100 Sobic006G196200--Sobic007G009100 Sobic008G107500 Sobic008G107500 Sobic001G393800--Sobic008G107500 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic001G393800--Sobic003G333400 Sobic004G167400 Sobic004G167400 Sobic001G393800--Sobic004G167400 Sobic001G393800--Sobic001G057800 Sobic002G175500 Sobic002G175500 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G393800--Sobic001G023200
Octagon: transcription factors


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