Gene annotation
Transcriptome id Sobic.006G196200.1
Synonym Sb06g026850
Functional annotation expressed protein
UniProt C5YEY7
Pfam -
Panther DB PTHR35282 PTHR35282:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g49954.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G196200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G333900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLF4 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
2 Sobic.008G034500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
3 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
4 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
5 Sobic.002G328300 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.004G276100 expressed protein -
7 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
9 Sobic.007G009100 dehydrogenase, putative, expressed -
10 Sobic.007G106900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoribonuclease Dicer, putative, expressed -
11 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
12 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
13 Sobic.009G082700 serine/threonine-protein kinase receptor precursor, putative, expressed -
14 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
15 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
16 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
19 Sobic.004G167800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pectinesterase inhibitor domain containing protein, putative, expressed -
20 Sobic.001G247900 "Protein chitinase 2, putative, (Os)"(PubMedID : 27208977)@chitinase 2, putative, expressed -


Gene co-expression network
sample Sobic006G196200 Sobic006G196200 Sobic002G333900 Sobic002G333900 Sobic006G196200--Sobic002G333900 Sobic008G034500 Sobic008G034500 Sobic006G196200--Sobic008G034500 Sobic001G401300 Sobic001G401300 Sobic006G196200--Sobic001G401300 Sobic002G249000 Sobic002G249000 Sobic006G196200--Sobic002G249000 Sobic002G328300 Sobic002G328300 Sobic006G196200--Sobic002G328300 Sobic004G276100 Sobic004G276100 Sobic006G196200--Sobic004G276100 Sobic010G176700 Sobic010G176700 Sobic006G196200--Sobic010G176700 Sobic003G215800 Sobic003G215800 Sobic006G196200--Sobic003G215800 Sobic007G009100 Sobic007G009100 Sobic006G196200--Sobic007G009100 Sobic002G333900--Sobic001G401300 Sobic002G333900--Sobic008G034500 Sobic001G247900 Sobic001G247900 Sobic002G333900--Sobic001G247900 Sobic002G333900--Sobic006G196200 Sobic003G152100 Sobic003G152100 Sobic002G333900--Sobic003G152100 Sobic001G466000 Sobic001G466000 Sobic002G333900--Sobic001G466000 Sobic001G400700 Sobic001G400700 Sobic002G333900--Sobic001G400700 Sobic002G333900--Sobic002G328300 Sobic001G401200 Sobic001G401200 Sobic002G333900--Sobic001G401200 Sobic008G034500--Sobic001G401300 Sobic008G034500--Sobic003G152100 Sobic002G367400 Sobic002G367400 Sobic008G034500--Sobic002G367400 Sobic008G034500--Sobic002G333900 Sobic008G034500--Sobic001G400700 Sobic008G034500--Sobic001G466000 Sobic008G034500--Sobic002G328300 Sobic003G349600 Sobic003G349600 Sobic008G034500--Sobic003G349600 Sobic009G143400 Sobic009G143400 Sobic008G034500--Sobic009G143400 Sobic001G401300--Sobic001G401200 Sobic001G401300--Sobic001G400700 Sobic001G401300--Sobic008G034500 Sobic001G401300--Sobic003G215800 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic009G043600 Sobic009G043600 Sobic001G401300--Sobic009G043600 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic001G010400 Sobic001G010400 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic009G003900 Sobic009G003900 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic003G285500 Sobic003G285500 Sobic002G328300--Sobic003G285500 Sobic002G328300--Sobic009G143400 Sobic003G265200 Sobic003G265200 Sobic002G328300--Sobic003G265200 Sobic006G106800 Sobic006G106800 Sobic002G328300--Sobic006G106800 Sobic009G254900 Sobic009G254900 Sobic002G328300--Sobic009G254900 Sobic005G229700 Sobic005G229700 Sobic002G328300--Sobic005G229700 Sobic002G328300--Sobic002G367400 Sobic002G328300--Sobic008G034500 Sobic009G221400 Sobic009G221400 Sobic002G328300--Sobic009G221400 Sobic008G179500 Sobic008G179500 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic009G111600 Sobic009G111600 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic003G061400 Sobic003G061400 Sobic010G176700--Sobic003G061400 Sobic010G176700--Sobic002G249000 Sobic010G176700--Sobic009G003900 Sobic001G184000 Sobic001G184000 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic003G442500 Sobic003G442500 Sobic010G176700--Sobic003G442500 Sobic004G185900 Sobic004G185900 Sobic010G176700--Sobic004G185900 Sobic010G176700--Sobic001G010400 Sobic010G176700--Sobic004G277000 Sobic003G215800--Sobic001G401300 Sobic005G137200 Sobic005G137200 Sobic003G215800--Sobic005G137200 Sobic002G090200 Sobic002G090200 Sobic003G215800--Sobic002G090200 Sobic001G454100 Sobic001G454100 Sobic003G215800--Sobic001G454100 Sobic003G215800--Sobic008G034500 Sobic003G215800--Sobic001G466000 Sobic010G107100 Sobic010G107100 Sobic003G215800--Sobic010G107100 Sobic004G058000 Sobic004G058000 Sobic003G215800--Sobic004G058000 Sobic010G004200 Sobic010G004200 Sobic003G215800--Sobic010G004200 Sobic007G009100--Sobic007G078100 Sobic001G201100 Sobic001G201100 Sobic007G009100--Sobic001G201100 Sobic010G080500 Sobic010G080500 Sobic007G009100--Sobic010G080500 Sobic007G009100--Sobic004G276100 Sobic007G009100--Sobic001G010400 Sobic004G166500 Sobic004G166500 Sobic007G009100--Sobic004G166500 Sobic002G231600 Sobic002G231600 Sobic007G009100--Sobic002G231600 Sobic010G072300 Sobic010G072300 Sobic007G009100--Sobic010G072300 Sobic004G069200 Sobic004G069200 Sobic007G009100--Sobic004G069200
Octagon: transcription factors


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