Gene annotation
Transcriptome id Sobic.008G034500.1
Synonym PSK3, Sb08g002970, ATPSK3, PSK1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
phytosulfokines precursor, putative, expressed
UniProt C5YRP6 , Q7PCA3
Pfam PF06404
Panther DB PTHR33285 PTHR33285:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008283; cell population proliferation GO:0008083growth factor activity GO:0005576extracellular region


Orthologs (automatic annotation)
TAIR AT3G44735 : PHYTOSULFOKINE 3 PRECURSOR
RAP-DB (Rice) LOC_Os12g05260.1 : phytosulfokines precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033468 , Zm00025a053858 , Zm00025a053857
Brachypodium KQJ92294 , KQJ92293
Barley HORVU5Hr1G041400.1
Wheat TraesCS5D02G137900 , TraesCS5B02G130300 , TraesCS5A02G130400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
2 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
3 Sobic.002G367400 esterase, putative, expressed -
4 Sobic.002G333900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLF4 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
5 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
6 Sobic.001G466000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.002G328300 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
9 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
10 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
11 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.009G151600 AP2 domain containing protein, expressed -
14 Sobic.001G401100 pathogenesis-related Bet v I family protein, putative, expressed -
15 Sobic.009G070400 expressed protein -
16 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
17 Sobic.010G176600 - -
18 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.002G282400 expressed protein -
20 Sobic.008G136400 expressed protein -


Gene co-expression network
sample Sobic008G034500 Sobic008G034500 Sobic001G401300 Sobic001G401300 Sobic008G034500--Sobic001G401300 Sobic003G152100 Sobic003G152100 Sobic008G034500--Sobic003G152100 Sobic002G367400 Sobic002G367400 Sobic008G034500--Sobic002G367400 Sobic002G333900 Sobic002G333900 Sobic008G034500--Sobic002G333900 Sobic001G400700 Sobic001G400700 Sobic008G034500--Sobic001G400700 Sobic001G466000 Sobic001G466000 Sobic008G034500--Sobic001G466000 Sobic002G328300 Sobic002G328300 Sobic008G034500--Sobic002G328300 Sobic003G349600 Sobic003G349600 Sobic008G034500--Sobic003G349600 Sobic009G143400 Sobic009G143400 Sobic008G034500--Sobic009G143400 Sobic001G401200 Sobic001G401200 Sobic001G401300--Sobic001G401200 Sobic001G401300--Sobic001G400700 Sobic001G401300--Sobic008G034500 Sobic003G215800 Sobic003G215800 Sobic001G401300--Sobic003G215800 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G247900 Sobic001G247900 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic009G043600 Sobic009G043600 Sobic001G401300--Sobic009G043600 Sobic010G084100 Sobic010G084100 Sobic003G152100--Sobic010G084100 Sobic005G206601 Sobic005G206601 Sobic003G152100--Sobic005G206601 Sobic004G071650 Sobic004G071650 Sobic003G152100--Sobic004G071650 Sobic003G117600 Sobic003G117600 Sobic003G152100--Sobic003G117600 Sobic002G183200 Sobic002G183200 Sobic003G152100--Sobic002G183200 Sobic001G400800 Sobic001G400800 Sobic003G152100--Sobic001G400800 Sobic008G063400 Sobic008G063400 Sobic003G152100--Sobic008G063400 Sobic010G084700 Sobic010G084700 Sobic003G152100--Sobic010G084700 Sobic005G045900 Sobic005G045900 Sobic003G152100--Sobic005G045900 Sobic004G237800 Sobic004G237800 Sobic002G367400--Sobic004G237800 Sobic002G055700 Sobic002G055700 Sobic002G367400--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic002G367400--Sobic002G017800 Sobic002G367400--Sobic001G466000 Sobic001G367600 Sobic001G367600 Sobic002G367400--Sobic001G367600 Sobic003G043500 Sobic003G043500 Sobic002G367400--Sobic003G043500 Sobic009G111000 Sobic009G111000 Sobic002G367400--Sobic009G111000 Sobic001G046100 Sobic001G046100 Sobic002G367400--Sobic001G046100 Sobic004G321300 Sobic004G321300 Sobic002G367400--Sobic004G321300 Sobic002G333900--Sobic001G401300 Sobic002G333900--Sobic008G034500 Sobic002G333900--Sobic001G247900 Sobic006G196200 Sobic006G196200 Sobic002G333900--Sobic006G196200 Sobic002G333900--Sobic003G152100 Sobic002G333900--Sobic001G466000 Sobic002G333900--Sobic001G400700 Sobic002G333900--Sobic002G328300 Sobic002G333900--Sobic001G401200 Sobic001G400700--Sobic001G400800 Sobic005G101800 Sobic005G101800 Sobic001G400700--Sobic005G101800 Sobic004G245800 Sobic004G245800 Sobic001G400700--Sobic004G245800 Sobic003G286600 Sobic003G286600 Sobic001G400700--Sobic003G286600 Sobic001G177800 Sobic001G177800 Sobic001G400700--Sobic001G177800 Sobic010G176600 Sobic010G176600 Sobic001G400700--Sobic010G176600 Sobic003G252800 Sobic003G252800 Sobic001G400700--Sobic003G252800 Sobic001G400700--Sobic002G183200 Sobic006G099900 Sobic006G099900 Sobic001G400700--Sobic006G099900 Sobic001G466000--Sobic002G367400 Sobic001G466000--Sobic003G349600 Sobic009G254900 Sobic009G254900 Sobic001G466000--Sobic009G254900 Sobic001G466000--Sobic009G143400 Sobic005G063100 Sobic005G063100 Sobic001G466000--Sobic005G063100 Sobic009G234100 Sobic009G234100 Sobic001G466000--Sobic009G234100 Sobic002G336600 Sobic002G336600 Sobic001G466000--Sobic002G336600 Sobic008G136400 Sobic008G136400 Sobic001G466000--Sobic008G136400 Sobic003G116800 Sobic003G116800 Sobic001G466000--Sobic003G116800 Sobic003G285500 Sobic003G285500 Sobic002G328300--Sobic003G285500 Sobic002G328300--Sobic009G143400 Sobic003G265200 Sobic003G265200 Sobic002G328300--Sobic003G265200 Sobic006G106800 Sobic006G106800 Sobic002G328300--Sobic006G106800 Sobic002G328300--Sobic009G254900 Sobic005G229700 Sobic005G229700 Sobic002G328300--Sobic005G229700 Sobic002G328300--Sobic002G367400 Sobic002G328300--Sobic008G034500 Sobic009G221400 Sobic009G221400 Sobic002G328300--Sobic009G221400 Sobic004G243100 Sobic004G243100 Sobic003G349600--Sobic004G243100 Sobic009G224100 Sobic009G224100 Sobic003G349600--Sobic009G224100 Sobic001G330100 Sobic001G330100 Sobic003G349600--Sobic001G330100 Sobic007G155200 Sobic007G155200 Sobic003G349600--Sobic007G155200 Sobic002G140400 Sobic002G140400 Sobic003G349600--Sobic002G140400 Sobic008G187001 Sobic008G187001 Sobic003G349600--Sobic008G187001 Sobic007G036900 Sobic007G036900 Sobic003G349600--Sobic007G036900 Sobic002G139400 Sobic002G139400 Sobic003G349600--Sobic002G139400 Sobic002G263400 Sobic002G263400 Sobic003G349600--Sobic002G263400 Sobic010G086200 Sobic010G086200 Sobic009G143400--Sobic010G086200 Sobic003G393700 Sobic003G393700 Sobic009G143400--Sobic003G393700 Sobic004G061200 Sobic004G061200 Sobic009G143400--Sobic004G061200 Sobic003G379800 Sobic003G379800 Sobic009G143400--Sobic003G379800 Sobic001G281400 Sobic001G281400 Sobic009G143400--Sobic001G281400 Sobic002G046100 Sobic002G046100 Sobic009G143400--Sobic002G046100 Sobic010G149300 Sobic010G149300 Sobic009G143400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic009G143400--Sobic002G190900 Sobic009G033700 Sobic009G033700 Sobic009G143400--Sobic009G033700
Octagon: transcription factors


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