Gene annotation
Transcriptome id Sobic.002G249000.2,Sobic.002G249000.3,Sobic.002G249000.4,Sobic.002G249000.1
Synonym Sb02g028500
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
AT hook motif domain containing protein, expressed
UniProt C5X4G6
Pfam PF03479
Panther DB PTHR31500 PTHR31500:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33620 : AT hook motif DNA-binding family protein
RAP-DB (Rice) LOC_Os09g31470.1 : AT hook motif domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047461 , Zm00025a014221
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G277000 purine permease, putative, expressed -
2 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
3 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
4 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
5 Sobic.010G224200 MYB family transcription factor, putative, expressed -
6 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
7 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
9 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
10 Sobic.004G276100 expressed protein -
11 Sobic.004G167800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pectinesterase inhibitor domain containing protein, putative, expressed -
12 Sobic.004G058000 VQ domain containing protein, putative, expressed -
13 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
16 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
19 Sobic.001G026900 cytidine deaminase, putative, expressed -
20 Sobic.009G082700 serine/threonine-protein kinase receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic002G249000 Sobic002G249000 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic001G010400 Sobic001G010400 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic009G003900 Sobic009G003900 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic004G277000--Sobic004G050000 Sobic009G043600 Sobic009G043600 Sobic004G277000--Sobic009G043600 Sobic004G277000--Sobic002G249000 Sobic004G277000--Sobic009G003900 Sobic002G267500 Sobic002G267500 Sobic004G277000--Sobic002G267500 Sobic006G173900 Sobic006G173900 Sobic004G277000--Sobic006G173900 Sobic004G276100 Sobic004G276100 Sobic004G277000--Sobic004G276100 Sobic009G177800 Sobic009G177800 Sobic004G277000--Sobic009G177800 Sobic002G264400 Sobic002G264400 Sobic004G277000--Sobic002G264400 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic002G090200 Sobic002G090200 Sobic004G050000--Sobic002G090200 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic009G003900--Sobic004G277000 Sobic009G003900--Sobic002G249000 Sobic009G003900--Sobic004G050000 Sobic009G003900--Sobic005G117400 Sobic009G003900--Sobic002G264400 Sobic001G184000 Sobic001G184000 Sobic009G003900--Sobic001G184000 Sobic009G003900--Sobic002G090200 Sobic009G003900--Sobic002G180600 Sobic010G072000 Sobic010G072000 Sobic009G003900--Sobic010G072000 Sobic003G019200 Sobic003G019200 Sobic010G224200--Sobic003G019200 Sobic010G224200--Sobic002G249000 Sobic010G224200--Sobic009G177800 Sobic004G058000 Sobic004G058000 Sobic010G224200--Sobic004G058000 Sobic008G111100 Sobic008G111100 Sobic010G224200--Sobic008G111100 Sobic002G423300 Sobic002G423300 Sobic010G224200--Sobic002G423300 Sobic010G224200--Sobic004G307000 Sobic010G224200--Sobic004G050000 Sobic010G107100 Sobic010G107100 Sobic010G224200--Sobic010G107100 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic005G117400--Sobic004G058000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic003G061400 Sobic003G061400 Sobic010G176700--Sobic003G061400 Sobic010G176700--Sobic002G249000 Sobic010G176700--Sobic009G003900 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic003G442500 Sobic003G442500 Sobic010G176700--Sobic003G442500 Sobic010G176700--Sobic004G185900 Sobic010G176700--Sobic001G010400 Sobic010G176700--Sobic004G277000 Sobic002G180600--Sobic002G264400 Sobic006G264300 Sobic006G264300 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic010G253800 Sobic010G253800 Sobic002G180600--Sobic010G253800 Sobic006G141500 Sobic006G141500 Sobic002G180600--Sobic006G141500 Sobic002G180600--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic004G307000--Sobic009G177800 Sobic003G322900 Sobic003G322900 Sobic004G307000--Sobic003G322900 Sobic007G137700 Sobic007G137700 Sobic004G307000--Sobic007G137700 Sobic004G307000--Sobic008G111100 Sobic002G195900 Sobic002G195900 Sobic004G307000--Sobic002G195900 Sobic002G055600 Sobic002G055600 Sobic004G307000--Sobic002G055600 Sobic004G307000--Sobic004G050000 Sobic004G307000--Sobic002G423300 Sobic002G117100 Sobic002G117100 Sobic004G307000--Sobic002G117100
Octagon: transcription factors


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