Gene annotation
Transcriptome id Sobic.009G122600.1
Synonym Sb09g019040, LRP1
Functional annotation LRP1, putative, expressed
UniProt C5YXE4
Pfam PF05142
Panther DB PTHR31604 PTHR31604:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G12330 : Lateral root primordium (LRP) protein-related
RAP-DB (Rice) LOC_Os05g32070.1 : LRP1, putative, expressed
MaizeGDB (Corn) Zm00025a043533 , Zm00025a037074
Brachypodium KQK11604 , PNT73613 , KQK06526 , KQK06527
Barley HORVU1Hr1G056760.3 , HORVU1Hr1G056760.2 , HORVU1Hr1G056760.5 , HORVU1Hr1G056760.4 , HORVU1Hr1G056760.7 , HORVU1Hr1G056760.6 , HORVU1Hr1G056760.9 , HORVU1Hr1G056760.8
Wheat TraesCS1A02G241400 , TraesCS1D02G241300 , TraesCS1B02G253200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G035600 receptor-like protein kinase 2 precursor, putative, expressed -
2 Sobic.006G066700 OsFBLD2 - F-box, LRR and FBD domain containing protein, expressed -
3 Sobic.006G125200 ubiquitin family protein, putative, expressed -
4 Sobic.009G137500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.010G151700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@extra-large G-protein-related, putative, expressed -
6 Sobic.001G080200 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
8 Sobic.004G228400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding protein, putative, expressed -
9 Sobic.001G439000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
10 Sobic.001G464000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
11 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
12 Sobic.001G469100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-06 - C2H2 zinc finger protein, expressed -
13 Sobic.001G468400 Increased expression in phyB-1 mutant(PubMedID : 26893475)@Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed -
14 Sobic.005G110457 - -
15 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.002G092200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
17 Sobic.007G009100 dehydrogenase, putative, expressed -
18 Sobic.002G420500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G236700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
20 Sobic.003G328900 UBA/TS-N domain containing protein, expressed -


Gene co-expression network
sample Sobic009G122600 Sobic009G122600 Sobic002G035600 Sobic002G035600 Sobic009G122600--Sobic002G035600 Sobic006G066700 Sobic006G066700 Sobic009G122600--Sobic006G066700 Sobic006G125200 Sobic006G125200 Sobic009G122600--Sobic006G125200 Sobic009G137500 Sobic009G137500 Sobic009G122600--Sobic009G137500 Sobic010G151700 Sobic010G151700 Sobic009G122600--Sobic010G151700 Sobic001G080200 Sobic001G080200 Sobic009G122600--Sobic001G080200 Sobic003G412800 Sobic003G412800 Sobic009G122600--Sobic003G412800 Sobic004G228400 Sobic004G228400 Sobic009G122600--Sobic004G228400 Sobic001G439000 Sobic001G439000 Sobic009G122600--Sobic001G439000 Sobic001G464000 Sobic001G464000 Sobic002G035600--Sobic001G464000 Sobic002G035600--Sobic010G151700 Sobic006G236700 Sobic006G236700 Sobic002G035600--Sobic006G236700 Sobic002G035600--Sobic009G122600 Sobic001G030400 Sobic001G030400 Sobic002G035600--Sobic001G030400 Sobic010G265900 Sobic010G265900 Sobic002G035600--Sobic010G265900 Sobic003G345200 Sobic003G345200 Sobic002G035600--Sobic003G345200 Sobic010G144900 Sobic010G144900 Sobic002G035600--Sobic010G144900 Sobic002G146601 Sobic002G146601 Sobic002G035600--Sobic002G146601 Sobic002G092200 Sobic002G092200 Sobic006G066700--Sobic002G092200 Sobic001G469100 Sobic001G469100 Sobic006G066700--Sobic001G469100 Sobic008G135500 Sobic008G135500 Sobic006G066700--Sobic008G135500 Sobic006G066700--Sobic006G125200 Sobic005G129700 Sobic005G129700 Sobic006G066700--Sobic005G129700 Sobic006G066700--Sobic009G122600 Sobic001G468500 Sobic001G468500 Sobic006G066700--Sobic001G468500 Sobic010G261000 Sobic010G261000 Sobic006G066700--Sobic010G261000 Sobic006G066700--Sobic010G265900 Sobic006G125200--Sobic009G137500 Sobic003G016200 Sobic003G016200 Sobic006G125200--Sobic003G016200 Sobic006G187000 Sobic006G187000 Sobic006G125200--Sobic006G187000 Sobic001G276600 Sobic001G276600 Sobic006G125200--Sobic001G276600 Sobic001G276800 Sobic001G276800 Sobic006G125200--Sobic001G276800 Sobic008G150500 Sobic008G150500 Sobic006G125200--Sobic008G150500 Sobic001G046400 Sobic001G046400 Sobic006G125200--Sobic001G046400 Sobic003G283900 Sobic003G283900 Sobic006G125200--Sobic003G283900 Sobic010G048700 Sobic010G048700 Sobic006G125200--Sobic010G048700 Sobic009G137500--Sobic006G187000 Sobic001G267100 Sobic001G267100 Sobic009G137500--Sobic001G267100 Sobic006G105600 Sobic006G105600 Sobic009G137500--Sobic006G105600 Sobic006G255300 Sobic006G255300 Sobic009G137500--Sobic006G255300 Sobic003G366000 Sobic003G366000 Sobic009G137500--Sobic003G366000 Sobic009G137500--Sobic003G016200 Sobic009G137500--Sobic001G276800 Sobic009G137500--Sobic008G150500 Sobic009G137500--Sobic001G046400 Sobic008G083500 Sobic008G083500 Sobic010G151700--Sobic008G083500 Sobic006G124400 Sobic006G124400 Sobic010G151700--Sobic006G124400 Sobic010G151700--Sobic003G412800 Sobic006G281400 Sobic006G281400 Sobic010G151700--Sobic006G281400 Sobic003G179500 Sobic003G179500 Sobic010G151700--Sobic003G179500 Sobic010G105400 Sobic010G105400 Sobic010G151700--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic010G151700--Sobic005G144600 Sobic003G423600 Sobic003G423600 Sobic010G151700--Sobic003G423600 Sobic002G296000 Sobic002G296000 Sobic010G151700--Sobic002G296000 Sobic003G283600 Sobic003G283600 Sobic001G080200--Sobic003G283600 Sobic001G123100 Sobic001G123100 Sobic001G080200--Sobic001G123100 Sobic006G133700 Sobic006G133700 Sobic001G080200--Sobic006G133700 Sobic001G452900 Sobic001G452900 Sobic001G080200--Sobic001G452900 Sobic001G083500 Sobic001G083500 Sobic001G080200--Sobic001G083500 Sobic002G337600 Sobic002G337600 Sobic001G080200--Sobic002G337600 Sobic010G241100 Sobic010G241100 Sobic001G080200--Sobic010G241100 Sobic010G086000 Sobic010G086000 Sobic001G080200--Sobic010G086000 Sobic002G284100 Sobic002G284100 Sobic001G080200--Sobic002G284100 Sobic003G412800--Sobic003G179500 Sobic010G079100 Sobic010G079100 Sobic003G412800--Sobic010G079100 Sobic003G289800 Sobic003G289800 Sobic003G412800--Sobic003G289800 Sobic010G103700 Sobic010G103700 Sobic003G412800--Sobic010G103700 Sobic001G051300 Sobic001G051300 Sobic003G412800--Sobic001G051300 Sobic009G119700 Sobic009G119700 Sobic003G412800--Sobic009G119700 Sobic003G412800--Sobic010G151700 Sobic002G351700 Sobic002G351700 Sobic003G412800--Sobic002G351700 Sobic009G189200 Sobic009G189200 Sobic003G412800--Sobic009G189200 Sobic006G104300 Sobic006G104300 Sobic004G228400--Sobic006G104300 Sobic003G025900 Sobic003G025900 Sobic004G228400--Sobic003G025900 Sobic001G395700 Sobic001G395700 Sobic004G228400--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic004G228400--Sobic005G019800 Sobic001G023200 Sobic001G023200 Sobic004G228400--Sobic001G023200 Sobic010G168200 Sobic010G168200 Sobic004G228400--Sobic010G168200 Sobic007G106900 Sobic007G106900 Sobic004G228400--Sobic007G106900 Sobic003G009100 Sobic003G009100 Sobic004G228400--Sobic003G009100 Sobic004G228400--Sobic009G122600 Sobic001G439000--Sobic009G137500 Sobic001G439000--Sobic006G105600 Sobic001G439000--Sobic001G267100 Sobic002G315500 Sobic002G315500 Sobic001G439000--Sobic002G315500 Sobic010G277300 Sobic010G277300 Sobic001G439000--Sobic010G277300 Sobic001G439000--Sobic006G187000 Sobic005G210600 Sobic005G210600 Sobic001G439000--Sobic005G210600 Sobic001G439000--Sobic006G255300 Sobic006G212400 Sobic006G212400 Sobic001G439000--Sobic006G212400
Octagon: transcription factors


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