Gene annotation
Transcriptome id Sobic.006G125200.1
Synonym Sb06g020550
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5YAV7
Pfam PF00240
Panther DB PTHR10666 PTHR10666:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14360 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os02g38410.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010965 , Zm00025a021294 , Zm00025a031856
Brachypodium KQK00181 , KQJ83212
Barley HORVU2Hr1G083680.3 , HORVU2Hr1G083680.2 , HORVU2Hr1G083680.1 , HORVU2Hr1G083700.4 , HORVU2Hr1G083700.2 , HORVU2Hr1G083700.3 , HORVU2Hr1G083700.1 , HORVU2Hr1G083660.1
Wheat TraesCS2A02G321800 , TraesCS2A02G321900 , TraesCS2A02G321700 , TraesCS2B02G360700 , TraesCS2A02G322100 , TraesCS2D02G340900 , TraesCS2A02G322000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G137500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.003G016200 expressed protein -
3 Sobic.006G187000 leucine-rich repeat family protein, putative, expressed -
4 Sobic.001G276600 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
5 Sobic.001G276800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
6 Sobic.008G150500 - -
7 Sobic.001G046400 expressed protein -
8 Sobic.003G283900 leucine-rich repeat family protein, putative, expressed -
9 Sobic.010G048700 expressed protein -
10 Sobic.005G187000 cyclin-dependent kinase inhibitor, putative, expressed -
11 Sobic.006G110850 - -
12 Sobic.001G286800 expressed protein -
13 Sobic.001G267100 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
14 Sobic.004G211800 - -
15 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
16 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
17 Sobic.003G366000 DUF623 domain containing protein, expressed -
18 Sobic.006G129600 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.008G135500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G302700 YABBY domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G125200 Sobic006G125200 Sobic009G137500 Sobic009G137500 Sobic006G125200--Sobic009G137500 Sobic003G016200 Sobic003G016200 Sobic006G125200--Sobic003G016200 Sobic006G187000 Sobic006G187000 Sobic006G125200--Sobic006G187000 Sobic001G276600 Sobic001G276600 Sobic006G125200--Sobic001G276600 Sobic001G276800 Sobic001G276800 Sobic006G125200--Sobic001G276800 Sobic008G150500 Sobic008G150500 Sobic006G125200--Sobic008G150500 Sobic001G046400 Sobic001G046400 Sobic006G125200--Sobic001G046400 Sobic003G283900 Sobic003G283900 Sobic006G125200--Sobic003G283900 Sobic010G048700 Sobic010G048700 Sobic006G125200--Sobic010G048700 Sobic009G137500--Sobic006G187000 Sobic001G267100 Sobic001G267100 Sobic009G137500--Sobic001G267100 Sobic006G105600 Sobic006G105600 Sobic009G137500--Sobic006G105600 Sobic006G255300 Sobic006G255300 Sobic009G137500--Sobic006G255300 Sobic003G366000 Sobic003G366000 Sobic009G137500--Sobic003G366000 Sobic009G137500--Sobic003G016200 Sobic009G137500--Sobic001G276800 Sobic009G137500--Sobic008G150500 Sobic009G137500--Sobic001G046400 Sobic003G016200--Sobic003G283900 Sobic003G016200--Sobic001G046400 Sobic003G016200--Sobic008G150500 Sobic003G016200--Sobic006G187000 Sobic004G211800 Sobic004G211800 Sobic003G016200--Sobic004G211800 Sobic004G302700 Sobic004G302700 Sobic003G016200--Sobic004G302700 Sobic004G342000 Sobic004G342000 Sobic003G016200--Sobic004G342000 Sobic003G016200--Sobic009G137500 Sobic002G029700 Sobic002G029700 Sobic003G016200--Sobic002G029700 Sobic006G187000--Sobic008G150500 Sobic006G187000--Sobic009G137500 Sobic006G187000--Sobic001G046400 Sobic006G187000--Sobic003G366000 Sobic006G187000--Sobic004G302700 Sobic001G160000 Sobic001G160000 Sobic006G187000--Sobic001G160000 Sobic006G187000--Sobic003G016200 Sobic006G187000--Sobic003G283900 Sobic006G187000--Sobic001G267100 Sobic001G276600--Sobic004G211800 Sobic001G276600--Sobic008G150500 Sobic005G187000 Sobic005G187000 Sobic001G276600--Sobic005G187000 Sobic001G276600--Sobic006G187000 Sobic001G276600--Sobic003G283900 Sobic001G276600--Sobic003G016200 Sobic001G276600--Sobic001G046400 Sobic001G276600--Sobic009G137500 Sobic001G276600--Sobic002G029700 Sobic001G276800--Sobic006G255300 Sobic001G246600 Sobic001G246600 Sobic001G276800--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic001G276800--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic001G276800--Sobic004G330200 Sobic001G276800--Sobic009G137500 Sobic001G068132 Sobic001G068132 Sobic001G276800--Sobic001G068132 Sobic001G276800--Sobic006G187000 Sobic003G350400 Sobic003G350400 Sobic001G276800--Sobic003G350400 Sobic004G311600 Sobic004G311600 Sobic001G276800--Sobic004G311600 Sobic008G150500--Sobic006G187000 Sobic008G150500--Sobic001G046400 Sobic008G150500--Sobic003G283900 Sobic008G150500--Sobic004G211800 Sobic008G150500--Sobic003G016200 Sobic008G150500--Sobic004G302700 Sobic008G150500--Sobic002G029700 Sobic008G150500--Sobic009G137500 Sobic008G150500--Sobic004G342000 Sobic007G211200 Sobic007G211200 Sobic001G046400--Sobic007G211200 Sobic001G046400--Sobic008G150500 Sobic001G046400--Sobic006G187000 Sobic001G046400--Sobic004G302700 Sobic001G046400--Sobic004G342000 Sobic002G337600 Sobic002G337600 Sobic001G046400--Sobic002G337600 Sobic001G046400--Sobic003G016200 Sobic004G211700 Sobic004G211700 Sobic001G046400--Sobic004G211700 Sobic001G046400--Sobic003G283900 Sobic003G283900--Sobic003G016200 Sobic003G283900--Sobic004G211800 Sobic003G283900--Sobic008G150500 Sobic003G283900--Sobic001G046400 Sobic003G283900--Sobic004G302700 Sobic003G283900--Sobic006G187000 Sobic007G115400 Sobic007G115400 Sobic003G283900--Sobic007G115400 Sobic003G283900--Sobic004G211700 Sobic010G023400 Sobic010G023400 Sobic003G283900--Sobic010G023400 Sobic004G346500 Sobic004G346500 Sobic010G048700--Sobic004G346500 Sobic010G048700--Sobic006G125200 Sobic010G048700--Sobic003G283900 Sobic010G048700--Sobic001G276600 Sobic010G048700--Sobic007G115400 Sobic010G048700--Sobic003G016200 Sobic009G052300 Sobic009G052300 Sobic010G048700--Sobic009G052300 Sobic010G048700--Sobic004G211800 Sobic010G048700--Sobic008G150500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.