Gene annotation
Transcriptome id Sobic.006G129600.1
Synonym Sb06g020940, ATL5
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YBB8
Pfam PF13639
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G62690 : AtL5
RAP-DB (Rice) LOC_Os04g41070.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010930
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G167200 expressed protein -
2 Sobic.010G062200 expressed protein -
3 Sobic.003G000700 DNA binding protein, putative, expressed -
4 Sobic.001G110100 expressed protein -
5 Sobic.006G127750 - -
6 Sobic.009G074900 expressed protein -
7 Sobic.010G048200 expressed protein -
8 Sobic.010G259400 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.009G075000 expressed protein -
10 Sobic.002G173300 BURP domain containing protein, expressed -
11 Sobic.001G472400 pumilio domain-containing protein PPD1, putative, expressed -
12 Sobic.003G016000 LTPL18 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.003G088200 dihydroflavonol-4-reductase, putative, expressed -
14 Sobic.002G402233 - -
15 Sobic.004G202800 glycosyl hydrolase family 5 protein, putative, expressed -
16 Sobic.003G263800 LTPL150 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.002G427550 - -
18 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
19 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
20 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G129600 Sobic006G129600 Sobic010G167200 Sobic010G167200 Sobic006G129600--Sobic010G167200 Sobic010G062200 Sobic010G062200 Sobic006G129600--Sobic010G062200 Sobic003G000700 Sobic003G000700 Sobic006G129600--Sobic003G000700 Sobic001G110100 Sobic001G110100 Sobic006G129600--Sobic001G110100 Sobic006G127750 Sobic006G127750 Sobic006G129600--Sobic006G127750 Sobic009G074900 Sobic009G074900 Sobic006G129600--Sobic009G074900 Sobic010G048200 Sobic010G048200 Sobic006G129600--Sobic010G048200 Sobic010G259400 Sobic010G259400 Sobic006G129600--Sobic010G259400 Sobic009G075000 Sobic009G075000 Sobic006G129600--Sobic009G075000 Sobic010G167200--Sobic010G062200 Sobic010G167200--Sobic010G259400 Sobic010G167200--Sobic009G074900 Sobic010G167200--Sobic009G075000 Sobic003G088200 Sobic003G088200 Sobic010G167200--Sobic003G088200 Sobic002G402233 Sobic002G402233 Sobic010G167200--Sobic002G402233 Sobic003G016000 Sobic003G016000 Sobic010G167200--Sobic003G016000 Sobic007G107500 Sobic007G107500 Sobic010G167200--Sobic007G107500 Sobic007G037400 Sobic007G037400 Sobic010G167200--Sobic007G037400 Sobic010G062200--Sobic010G259400 Sobic010G062200--Sobic009G075000 Sobic010G062200--Sobic009G074900 Sobic010G053300 Sobic010G053300 Sobic010G062200--Sobic010G053300 Sobic010G062200--Sobic003G088200 Sobic010G062200--Sobic003G016000 Sobic003G263800 Sobic003G263800 Sobic010G062200--Sobic003G263800 Sobic008G032400 Sobic008G032400 Sobic010G062200--Sobic008G032400 Sobic002G427550 Sobic002G427550 Sobic010G062200--Sobic002G427550 Sobic003G000700--Sobic006G129600 Sobic003G000700--Sobic010G167200 Sobic006G059300 Sobic006G059300 Sobic003G000700--Sobic006G059300 Sobic003G000700--Sobic006G127750 Sobic003G000700--Sobic001G110100 Sobic001G310200 Sobic001G310200 Sobic003G000700--Sobic001G310200 Sobic010G226300 Sobic010G226300 Sobic003G000700--Sobic010G226300 Sobic003G000700--Sobic010G062200 Sobic002G035000 Sobic002G035000 Sobic003G000700--Sobic002G035000 Sobic001G110100--Sobic009G074900 Sobic001G110100--Sobic003G016000 Sobic001G110100--Sobic010G053300 Sobic001G110100--Sobic010G048200 Sobic001G110100--Sobic010G062200 Sobic001G110100--Sobic009G075000 Sobic001G110100--Sobic003G088200 Sobic001G110100--Sobic002G402233 Sobic002G173300 Sobic002G173300 Sobic001G110100--Sobic002G173300 Sobic001G511600 Sobic001G511600 Sobic006G127750--Sobic001G511600 Sobic001G472301 Sobic001G472301 Sobic006G127750--Sobic001G472301 Sobic003G011700 Sobic003G011700 Sobic006G127750--Sobic003G011700 Sobic001G102600 Sobic001G102600 Sobic006G127750--Sobic001G102600 Sobic006G127750--Sobic010G048200 Sobic001G472400 Sobic001G472400 Sobic006G127750--Sobic001G472400 Sobic010G189366 Sobic010G189366 Sobic006G127750--Sobic010G189366 Sobic006G127750--Sobic002G173300 Sobic004G349150 Sobic004G349150 Sobic006G127750--Sobic004G349150 Sobic009G074900--Sobic003G016000 Sobic009G074900--Sobic003G088200 Sobic009G074900--Sobic002G402233 Sobic009G074900--Sobic009G075000 Sobic009G074900--Sobic003G263800 Sobic001G133200 Sobic001G133200 Sobic009G074900--Sobic001G133200 Sobic010G048200--Sobic009G074900 Sobic010G048200--Sobic009G075000 Sobic010G048200--Sobic003G016000 Sobic010G187400 Sobic010G187400 Sobic010G048200--Sobic010G187400 Sobic010G048200--Sobic003G088200 Sobic010G048200--Sobic001G133200 Sobic010G259400--Sobic009G075000 Sobic010G259400--Sobic003G088200 Sobic010G259400--Sobic003G263800 Sobic010G259400--Sobic001G133200 Sobic009G075000--Sobic010G259400 Sobic009G075000--Sobic003G016000 Sobic009G075000--Sobic003G088200 Sobic009G075000--Sobic009G074900 Sobic009G075000--Sobic003G263800 Sobic009G075000--Sobic001G133200
Octagon: transcription factors


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