Gene annotation
Transcriptome id Sobic.003G068000.1
Synonym Sb03g005770
Functional annotation expressed protein
UniProt C5XPD0
Pfam -
Panther DB PTHR35162 PTHR35162:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os08g40500.1 : expressed protein
MaizeGDB (Corn) Zm00025a009152 , Zm00025a023425
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G068000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G159200 guanylyl cyclase, putative, expressed -
2 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.002G353800 homeobox domain containing protein, expressed K09338: homeobox-leucine zipper protein
5 Sobic.002G335300 uncharacterized Cys-rich domain containing protein, putative, expressed -
6 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
8 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
9 Sobic.001G372100 beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed -
10 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -
11 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G223600 MORN repeat domain containing protein, expressed -
13 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
14 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
15 Sobic.007G197600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
16 Sobic.004G075000 expressed protein -
17 Sobic.003G048000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.003G344600 BAG domain containing protein, expressed -
19 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
20 Sobic.002G224400 D-mannose binding lectin family protein, expressed -


Gene co-expression network
sample Sobic003G068000 Sobic003G068000 Sobic009G159200 Sobic009G159200 Sobic003G068000--Sobic009G159200 Sobic007G177100 Sobic007G177100 Sobic003G068000--Sobic007G177100 Sobic003G379800 Sobic003G379800 Sobic003G068000--Sobic003G379800 Sobic002G353800 Sobic002G353800 Sobic003G068000--Sobic002G353800 Sobic002G335300 Sobic002G335300 Sobic003G068000--Sobic002G335300 Sobic002G068300 Sobic002G068300 Sobic003G068000--Sobic002G068300 Sobic002G291900 Sobic002G291900 Sobic003G068000--Sobic002G291900 Sobic004G164500 Sobic004G164500 Sobic003G068000--Sobic004G164500 Sobic001G372100 Sobic001G372100 Sobic003G068000--Sobic001G372100 Sobic007G197600 Sobic007G197600 Sobic009G159200--Sobic007G197600 Sobic009G159200--Sobic007G177100 Sobic009G159200--Sobic002G353800 Sobic001G070800 Sobic001G070800 Sobic009G159200--Sobic001G070800 Sobic006G157500 Sobic006G157500 Sobic009G159200--Sobic006G157500 Sobic009G075900 Sobic009G075900 Sobic009G159200--Sobic009G075900 Sobic009G159200--Sobic003G379800 Sobic003G393700 Sobic003G393700 Sobic009G159200--Sobic003G393700 Sobic004G203700 Sobic004G203700 Sobic009G159200--Sobic004G203700 Sobic007G177100--Sobic009G159200 Sobic007G126100 Sobic007G126100 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic002G254200 Sobic002G254200 Sobic007G177100--Sobic002G254200 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic009G143400 Sobic009G143400 Sobic003G379800--Sobic009G143400 Sobic004G061200 Sobic004G061200 Sobic003G379800--Sobic004G061200 Sobic003G379800--Sobic003G393700 Sobic004G069200 Sobic004G069200 Sobic003G379800--Sobic004G069200 Sobic001G389000 Sobic001G389000 Sobic003G379800--Sobic001G389000 Sobic010G086200 Sobic010G086200 Sobic003G379800--Sobic010G086200 Sobic003G379800--Sobic001G070800 Sobic002G393000 Sobic002G393000 Sobic003G379800--Sobic002G393000 Sobic003G379800--Sobic009G159200 Sobic002G353800--Sobic009G075900 Sobic003G303100 Sobic003G303100 Sobic002G353800--Sobic003G303100 Sobic002G353800--Sobic004G203700 Sobic002G353800--Sobic009G159200 Sobic001G004800 Sobic001G004800 Sobic002G353800--Sobic001G004800 Sobic002G353800--Sobic001G372100 Sobic002G353800--Sobic001G070800 Sobic008G050600 Sobic008G050600 Sobic002G353800--Sobic008G050600 Sobic003G345100 Sobic003G345100 Sobic002G353800--Sobic003G345100 Sobic002G335300--Sobic004G212900 Sobic003G344600 Sobic003G344600 Sobic002G335300--Sobic003G344600 Sobic003G357300 Sobic003G357300 Sobic002G335300--Sobic003G357300 Sobic001G009500 Sobic001G009500 Sobic002G335300--Sobic001G009500 Sobic009G074100 Sobic009G074100 Sobic002G335300--Sobic009G074100 Sobic008G103700 Sobic008G103700 Sobic002G335300--Sobic008G103700 Sobic006G046900 Sobic006G046900 Sobic002G335300--Sobic006G046900 Sobic009G243400 Sobic009G243400 Sobic002G335300--Sobic009G243400 Sobic003G211200 Sobic003G211200 Sobic002G335300--Sobic003G211200 Sobic009G036900 Sobic009G036900 Sobic002G068300--Sobic009G036900 Sobic010G228600 Sobic010G228600 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic006G256500 Sobic006G256500 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic001G443800 Sobic001G443800 Sobic002G291900--Sobic001G443800 Sobic003G197200 Sobic003G197200 Sobic002G291900--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic002G291900--Sobic010G198500 Sobic003G260300 Sobic003G260300 Sobic002G291900--Sobic003G260300 Sobic007G214600 Sobic007G214600 Sobic002G291900--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic002G291900--Sobic003G148600 Sobic001G105900 Sobic001G105900 Sobic002G291900--Sobic001G105900 Sobic007G213800 Sobic007G213800 Sobic002G291900--Sobic007G213800 Sobic003G355100 Sobic003G355100 Sobic002G291900--Sobic003G355100 Sobic001G471900 Sobic001G471900 Sobic004G164500--Sobic001G471900 Sobic001G311000 Sobic001G311000 Sobic004G164500--Sobic001G311000 Sobic009G065000 Sobic009G065000 Sobic004G164500--Sobic009G065000 Sobic008G106800 Sobic008G106800 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic006G257900 Sobic006G257900 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic009G168900 Sobic009G168900 Sobic001G372100--Sobic009G168900 Sobic001G372100--Sobic006G157500 Sobic001G112200 Sobic001G112200 Sobic001G372100--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic001G372100--Sobic001G138600 Sobic001G318700 Sobic001G318700 Sobic001G372100--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic001G372100--Sobic009G184000 Sobic003G369100 Sobic003G369100 Sobic001G372100--Sobic003G369100 Sobic001G372100--Sobic003G260300 Sobic003G362700 Sobic003G362700 Sobic001G372100--Sobic003G362700
Octagon: transcription factors


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