Gene annotation
Transcriptome id Sobic.004G349175.2,Sobic.004G349175.1
Synonym -
Functional annotation -
UniProt C6JS95 , A0A109ND84
Pfam PF00512 PF01590 PF00072
Panther DB PTHR24423 PTHR24423:SF489
NCBI CDD KOG0519; Sensory transduction histidine kinase
KEGG Orthology K14509; ETR, ethylene receptor
Gene Ontology GO:0007165; signal transduction GO:0000155phosphorelay sensor kinase activity GO:0005515protein binding GO:0000160phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT3G04580 : Signal transduction histidine kinase, hybrid-type, ethylene sensor
RAP-DB (Rice) LOC_Os02g57530.3,LOC_Os02g57530.2 : ethylene receptor, putative, expressed
MaizeGDB (Corn) Zm00025a048288 , Zm00025a032769 , Zm00025a034571 , Zm00025a055668 , Zm00025a012420
Brachypodium PNT60492 , PNT60491 , KQJ81436 , KQJ81437 , KQK01419
Barley HORVU5Hr1G049490.32 , HORVU6Hr1G091700.8 , HORVU6Hr1G091700.1 , HORVU6Hr1G091700.3 , HORVU6Hr1G091700.5 , HORVU6Hr1G091700.4 , HORVU6Hr1G091700.7 , HORVU6Hr1G091700.6 , HORVU6Hr1G091700.9
Wheat TraesCS6D02G383600 , TraesCS2B02G023800 , TraesCS6B02G439600 , TraesCS6A02G399400 , TraesCS6A02G399400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040300 expressed protein -
2 Sobic.004G173500 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
3 Sobic.001G543300 dehydrogenase, putative, expressed -
4 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
5 Sobic.008G132800 expressed protein -
6 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
7 Sobic.002G050200 expressed protein -
8 Sobic.006G098500 RNA recognition motif containing protein, putative, expressed -
9 Sobic.006G242300 - -
10 Sobic.001G098500 CBS domain containing membrane protein, putative, expressed -
11 Sobic.002G376300 FYVE zinc finger family protein, expressed -
12 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
13 Sobic.004G072800 expressed protein -
14 Sobic.010G038700 expressed protein -
15 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
16 Sobic.001G253600 expressed protein -
17 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
18 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
19 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
20 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)


Gene co-expression network
sample Sobic004G349175 Sobic004G349175 Sobic001G040300 Sobic001G040300 Sobic004G349175--Sobic001G040300 Sobic004G173500 Sobic004G173500 Sobic004G349175--Sobic004G173500 Sobic001G543300 Sobic001G543300 Sobic004G349175--Sobic001G543300 Sobic010G029400 Sobic010G029400 Sobic004G349175--Sobic010G029400 Sobic008G132800 Sobic008G132800 Sobic004G349175--Sobic008G132800 Sobic006G056600 Sobic006G056600 Sobic004G349175--Sobic006G056600 Sobic002G050200 Sobic002G050200 Sobic004G349175--Sobic002G050200 Sobic006G098500 Sobic006G098500 Sobic004G349175--Sobic006G098500 Sobic006G242300 Sobic006G242300 Sobic004G349175--Sobic006G242300 Sobic007G163700 Sobic007G163700 Sobic001G040300--Sobic007G163700 Sobic001G083200 Sobic001G083200 Sobic001G040300--Sobic001G083200 Sobic003G024800 Sobic003G024800 Sobic001G040300--Sobic003G024800 Sobic008G138600 Sobic008G138600 Sobic001G040300--Sobic008G138600 Sobic006G143500 Sobic006G143500 Sobic001G040300--Sobic006G143500 Sobic001G230900 Sobic001G230900 Sobic001G040300--Sobic001G230900 Sobic001G517600 Sobic001G517600 Sobic001G040300--Sobic001G517600 Sobic004G032000 Sobic004G032000 Sobic001G040300--Sobic004G032000 Sobic002G353500 Sobic002G353500 Sobic001G040300--Sobic002G353500 Sobic001G321500 Sobic001G321500 Sobic004G173500--Sobic001G321500 Sobic009G127000 Sobic009G127000 Sobic004G173500--Sobic009G127000 Sobic001G045000 Sobic001G045000 Sobic004G173500--Sobic001G045000 Sobic002G296300 Sobic002G296300 Sobic004G173500--Sobic002G296300 Sobic008G097401 Sobic008G097401 Sobic004G173500--Sobic008G097401 Sobic004G145200 Sobic004G145200 Sobic004G173500--Sobic004G145200 Sobic002G378800 Sobic002G378800 Sobic004G173500--Sobic002G378800 Sobic002G258100 Sobic002G258100 Sobic004G173500--Sobic002G258100 Sobic010G012300 Sobic010G012300 Sobic004G173500--Sobic010G012300 Sobic001G294200 Sobic001G294200 Sobic001G543300--Sobic001G294200 Sobic007G167700 Sobic007G167700 Sobic001G543300--Sobic007G167700 Sobic007G203700 Sobic007G203700 Sobic001G543300--Sobic007G203700 Sobic008G058300 Sobic008G058300 Sobic001G543300--Sobic008G058300 Sobic004G316900 Sobic004G316900 Sobic001G543300--Sobic004G316900 Sobic001G129300 Sobic001G129300 Sobic001G543300--Sobic001G129300 Sobic004G060600 Sobic004G060600 Sobic001G543300--Sobic004G060600 Sobic004G018800 Sobic004G018800 Sobic001G543300--Sobic004G018800 Sobic001G543300--Sobic006G242300 Sobic010G029400--Sobic008G132800 Sobic002G078400 Sobic002G078400 Sobic010G029400--Sobic002G078400 Sobic003G025200 Sobic003G025200 Sobic010G029400--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic010G029400--Sobic002G406500 Sobic002G115000 Sobic002G115000 Sobic010G029400--Sobic002G115000 Sobic005G157200 Sobic005G157200 Sobic010G029400--Sobic005G157200 Sobic010G029400--Sobic008G058300 Sobic001G377800 Sobic001G377800 Sobic010G029400--Sobic001G377800 Sobic009G016201 Sobic009G016201 Sobic010G029400--Sobic009G016201 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic008G132800--Sobic009G016201 Sobic001G331900 Sobic001G331900 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic001G091900 Sobic001G091900 Sobic006G056600--Sobic001G091900 Sobic002G341800 Sobic002G341800 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic002G050200--Sobic009G016201 Sobic002G050200--Sobic010G029400 Sobic007G095400 Sobic007G095400 Sobic002G050200--Sobic007G095400 Sobic002G050200--Sobic008G058300 Sobic009G045800 Sobic009G045800 Sobic002G050200--Sobic009G045800 Sobic004G300900 Sobic004G300900 Sobic002G050200--Sobic004G300900 Sobic002G263800 Sobic002G263800 Sobic002G050200--Sobic002G263800 Sobic001G005900 Sobic001G005900 Sobic002G050200--Sobic001G005900 Sobic002G050200--Sobic002G406500 Sobic009G211700 Sobic009G211700 Sobic006G098500--Sobic009G211700 Sobic010G251100 Sobic010G251100 Sobic006G098500--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic006G098500--Sobic001G402300 Sobic006G098500--Sobic006G056600 Sobic006G098500--Sobic001G091900 Sobic003G043100 Sobic003G043100 Sobic006G098500--Sobic003G043100 Sobic003G160900 Sobic003G160900 Sobic006G098500--Sobic003G160900 Sobic006G098500--Sobic002G341800 Sobic006G098500--Sobic001G083200 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic006G242300--Sobic004G072800 Sobic006G242300--Sobic003G043100
Octagon: transcription factors


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