Gene annotation
Transcriptome id Sobic.006G056600.1
Synonym Sb06g014470
Functional annotation ribosomal protein L4, putative, expressed
UniProt C5YEX6
Pfam PF00573
Panther DB PTHR10746
NCBI CDD KOG1624; Mitochondrial/chloroplast ribosomal protein L4
KEGG Orthology K02926; RP-L4, MRPL4, large subunit ribosomal protein L4
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G20060 : Ribosomal protein L4/L1 family
RAP-DB (Rice) LOC_Os11g37510.1 : ribosomal protein L4, putative, expressed
MaizeGDB (Corn) Zm00025a008619
Brachypodium -
Barley HORVU5Hr1G068590.19 , HORVU6Hr1G013230.8 , HORVU5Hr1G068590.13 , HORVU6Hr1G013230.6 , HORVU6Hr1G013230.5 , HORVU6Hr1G013230.4 , HORVU6Hr1G013230.3 , HORVU6Hr1G013230.2 , HORVU6Hr1G013230.1 , HORVU5Hr1G068590.14 , HORVU5Hr1G068590.9 , HORVU5Hr1G068590.8 , HORVU5Hr1G068590.3 , HORVU5Hr1G068590.2 , HORVU5Hr1G068590.1 , HORVU5Hr1G068590.7 , HORVU5Hr1G068590.6 , HORVU5Hr1G068590.5 , HORVU5Hr1G068590.4 , HORVU5Hr1G068590.12 , HORVU5Hr1G068590.11 , HORVU5Hr1G068590.10 , HORVU5Hr1G068590.17 , HORVU5Hr1G068590.22 , HORVU5Hr1G068590.20 , HORVU5Hr1G068590.15
Wheat TraesCS5D02G246400 , TraesCS5A02G239300 , TraesCS6B02G099200 , TraesCSU02G122900 , TraesCS6A02G074600 , TraesCS5B02G237900
Populus -


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cDNA sequences
Sobic.006G056600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
2 Sobic.006G242300 - -
3 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
4 Sobic.004G072800 expressed protein -
5 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
6 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
9 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
10 Sobic.002G143000 ubiquitin family protein, putative, expressed -
11 Sobic.001G204100 ribosomal protein S18 containing protein, expressed -
12 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
13 Sobic.004G185600 expressed protein -
14 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.010G251100 - K03257: translation initiation factor 4A
16 Sobic.002G376300 FYVE zinc finger family protein, expressed -
17 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
18 Sobic.003G214300 expressed protein -
19 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
20 Sobic.001G396800 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2


Gene co-expression network
sample Sobic006G056600 Sobic006G056600 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic001G091900 Sobic001G091900 Sobic006G056600--Sobic001G091900 Sobic002G341800 Sobic002G341800 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic001G201400 Sobic001G201400 Sobic001G201500--Sobic001G201400 Sobic001G201500--Sobic006G056600 Sobic010G002400 Sobic010G002400 Sobic001G201500--Sobic010G002400 Sobic002G313500 Sobic002G313500 Sobic001G201500--Sobic002G313500 Sobic005G155700 Sobic005G155700 Sobic001G201500--Sobic005G155700 Sobic009G075800 Sobic009G075800 Sobic001G201500--Sobic009G075800 Sobic003G012200 Sobic003G012200 Sobic001G201500--Sobic003G012200 Sobic003G287100 Sobic003G287100 Sobic001G201500--Sobic003G287100 Sobic001G033500 Sobic001G033500 Sobic001G201500--Sobic001G033500 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic004G072800--Sobic003G045400 Sobic001G041200--Sobic006G242300 Sobic001G041200--Sobic003G119400 Sobic001G041200--Sobic006G257001 Sobic001G041200--Sobic006G034800 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G041200--Sobic001G105100 Sobic001G041200--Sobic006G056600 Sobic001G041200--Sobic009G033900 Sobic004G326600 Sobic004G326600 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic001G091900--Sobic006G056600 Sobic001G481700 Sobic001G481700 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic001G091900--Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic004G047200 Sobic004G047200 Sobic002G014400--Sobic004G047200 Sobic002G014400--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic002G014400--Sobic002G423500 Sobic005G163700 Sobic005G163700 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic001G460500 Sobic001G460500 Sobic002G014400--Sobic001G460500 Sobic002G014400--Sobic002G394600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic010G247400--Sobic009G033900
Octagon: transcription factors


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