Gene annotation
Transcriptome id Sobic.001G204100.2,Sobic.001G204100.1,Sobic.001G204100.3,Sobic.001G204100.4
Synonym Sb01g018030
Functional annotation ribosomal protein S18 containing protein, expressed
UniProt A0A1Z5S744 , A0A1Z5S6J2 , C5WWG7 , A0A1Z5S6X2
Pfam PF01084
Panther DB PTHR13479 PTHR13479:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G07210 : Ribosomal protein S18
RAP-DB (Rice) LOC_Os10g35690.1 : ribosomal protein S18 containing protein, expressed
MaizeGDB (Corn) Zm00025a026157
Brachypodium -
Barley HORVU1Hr1G062620.7 , HORVU1Hr1G062620.6 , HORVU1Hr1G062620.5 , HORVU1Hr1G062620.4 , HORVU1Hr1G062620.3 , HORVU1Hr1G062620.2 , HORVU1Hr1G062620.1 , HORVU1Hr1G062620.9 , HORVU1Hr1G062620.16 , HORVU1Hr1G062620.15 , HORVU1Hr1G062620.14 , HORVU1Hr1G062620.13 , HORVU1Hr1G062620.12 , HORVU1Hr1G062620.11 , HORVU1Hr1G062620.10
Wheat TraesCS1B02G257800 , TraesCS1A02G247200
Populus -


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cDNA sequences
Sobic.001G204100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
2 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
3 Sobic.006G242300 - -
4 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
6 Sobic.010G251100 - K03257: translation initiation factor 4A
7 Sobic.010G184000 protein of unknown function domain containing protein, expressed -
8 Sobic.009G193850 - -
9 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
10 Sobic.001G105100 neighbor of COX4, putative, expressed -
11 Sobic.004G072800 expressed protein -
12 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
13 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
14 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
15 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
16 Sobic.009G226400 dynamin family protein, putative, expressed -
17 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
18 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
19 Sobic.003G142700 expressed protein -
20 Sobic.003G400100 leaf senescence related protein, putative, expressed -


Gene co-expression network
sample Sobic001G204100 Sobic001G204100 Sobic006G056600 Sobic006G056600 Sobic001G204100--Sobic006G056600 Sobic009G222900 Sobic009G222900 Sobic001G204100--Sobic009G222900 Sobic006G242300 Sobic006G242300 Sobic001G204100--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic001G204100--Sobic001G067900 Sobic004G011000 Sobic004G011000 Sobic001G204100--Sobic004G011000 Sobic010G251100 Sobic010G251100 Sobic001G204100--Sobic010G251100 Sobic010G184000 Sobic010G184000 Sobic001G204100--Sobic010G184000 Sobic009G193850 Sobic009G193850 Sobic001G204100--Sobic009G193850 Sobic004G283000 Sobic004G283000 Sobic001G204100--Sobic004G283000 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G056600--Sobic006G242300 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic001G091900 Sobic001G091900 Sobic006G056600--Sobic001G091900 Sobic002G341800 Sobic002G341800 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic009G219400 Sobic009G219400 Sobic009G222900--Sobic009G219400 Sobic001G404200 Sobic001G404200 Sobic009G222900--Sobic001G404200 Sobic001G061200 Sobic001G061200 Sobic009G222900--Sobic001G061200 Sobic006G094600 Sobic006G094600 Sobic009G222900--Sobic006G094600 Sobic003G214300 Sobic003G214300 Sobic009G222900--Sobic003G214300 Sobic009G222900--Sobic001G204100 Sobic004G025300 Sobic004G025300 Sobic009G222900--Sobic004G025300 Sobic009G004400 Sobic009G004400 Sobic009G222900--Sobic009G004400 Sobic010G205300 Sobic010G205300 Sobic009G222900--Sobic010G205300 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic008G009600 Sobic008G009600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic004G011000--Sobic010G247400 Sobic004G011000--Sobic009G193850 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic001G402300 Sobic001G402300 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic010G184000--Sobic001G402300 Sobic010G184000--Sobic010G251100 Sobic002G306400 Sobic002G306400 Sobic010G184000--Sobic002G306400 Sobic008G137600 Sobic008G137600 Sobic010G184000--Sobic008G137600 Sobic009G140700 Sobic009G140700 Sobic010G184000--Sobic009G140700 Sobic010G184000--Sobic004G011000 Sobic004G232800 Sobic004G232800 Sobic010G184000--Sobic004G232800 Sobic003G127300 Sobic003G127300 Sobic010G184000--Sobic003G127300 Sobic003G178900 Sobic003G178900 Sobic010G184000--Sobic003G178900 Sobic009G193850--Sobic001G041200 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic009G193850--Sobic006G242300 Sobic003G248500 Sobic003G248500 Sobic004G283000--Sobic003G248500 Sobic002G388200 Sobic002G388200 Sobic004G283000--Sobic002G388200 Sobic004G007300 Sobic004G007300 Sobic004G283000--Sobic004G007300 Sobic004G350100 Sobic004G350100 Sobic004G283000--Sobic004G350100 Sobic008G174300 Sobic008G174300 Sobic004G283000--Sobic008G174300 Sobic007G118200 Sobic007G118200 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic006G173100 Sobic006G173100 Sobic004G283000--Sobic006G173100 Sobic002G157300 Sobic002G157300 Sobic004G283000--Sobic002G157300
Octagon: transcription factors


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