Gene annotation
Transcriptome id Sobic.010G184000.1
Synonym Sb10g023460
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5Z5L8
Pfam PF01918
Panther DB PTHR31947 PTHR31947:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G34160 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os06g40040.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034611
Brachypodium KQJ86689 , KQK07273 , KQJ93923
Barley HORVU7Hr1G084100.1 , HORVU3Hr1G095800.1 , HORVU7Hr1G084100.3 , HORVU7Hr1G084100.2 , HORVU1Hr1G025500.2 , HORVU1Hr1G025500.4
Wheat TraesCS1B02G135500 , TraesCS6A02G175200 , TraesCS6B02G209900 , TraesCS6D02G168100 , TraesCS7D02G348900 , TraesCS1D02G117000 , TraesCS1A02G115600
Populus -


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cDNA sequences
Sobic.010G184000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
2 Sobic.010G251100 - K03257: translation initiation factor 4A
3 Sobic.002G306400 zinc finger family protein, putative, expressed -
4 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
5 Sobic.009G140700 PHD finger protein, putative, expressed -
6 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
7 Sobic.004G232800 expressed protein -
8 Sobic.003G127300 expressed protein -
9 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
10 Sobic.001G204100 ribosomal protein S18 containing protein, expressed -
11 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
12 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.001G105100 neighbor of COX4, putative, expressed -
14 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
15 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
16 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
17 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
18 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
19 Sobic.009G199700 expressed protein -
20 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2


Gene co-expression network
sample Sobic010G184000 Sobic010G184000 Sobic001G402300 Sobic001G402300 Sobic010G184000--Sobic001G402300 Sobic010G251100 Sobic010G251100 Sobic010G184000--Sobic010G251100 Sobic002G306400 Sobic002G306400 Sobic010G184000--Sobic002G306400 Sobic008G137600 Sobic008G137600 Sobic010G184000--Sobic008G137600 Sobic009G140700 Sobic009G140700 Sobic010G184000--Sobic009G140700 Sobic004G011000 Sobic004G011000 Sobic010G184000--Sobic004G011000 Sobic004G232800 Sobic004G232800 Sobic010G184000--Sobic004G232800 Sobic003G127300 Sobic003G127300 Sobic010G184000--Sobic003G127300 Sobic003G178900 Sobic003G178900 Sobic010G184000--Sobic003G178900 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic002G268400 Sobic002G268400 Sobic002G306400--Sobic002G268400 Sobic003G250500 Sobic003G250500 Sobic002G306400--Sobic003G250500 Sobic003G273400 Sobic003G273400 Sobic002G306400--Sobic003G273400 Sobic002G306400--Sobic001G226100 Sobic001G309100 Sobic001G309100 Sobic002G306400--Sobic001G309100 Sobic002G306400--Sobic001G402300 Sobic001G136900 Sobic001G136900 Sobic002G306400--Sobic001G136900 Sobic010G146600 Sobic010G146600 Sobic002G306400--Sobic010G146600 Sobic004G074300 Sobic004G074300 Sobic002G306400--Sobic004G074300 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic003G045400 Sobic003G045400 Sobic009G140700--Sobic003G045400 Sobic008G139700 Sobic008G139700 Sobic009G140700--Sobic008G139700 Sobic010G211300 Sobic010G211300 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic009G140700--Sobic001G309100 Sobic008G009600 Sobic008G009600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic004G011000--Sobic010G251100 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic010G205300 Sobic010G205300 Sobic004G232800--Sobic010G205300 Sobic004G356900 Sobic004G356900 Sobic004G232800--Sobic004G356900 Sobic009G004600 Sobic009G004600 Sobic004G232800--Sobic009G004600 Sobic006G049700 Sobic006G049700 Sobic004G232800--Sobic006G049700 Sobic009G192000 Sobic009G192000 Sobic004G232800--Sobic009G192000 Sobic010G057900 Sobic010G057900 Sobic004G232800--Sobic010G057900 Sobic003G349300 Sobic003G349300 Sobic004G232800--Sobic003G349300 Sobic004G226800 Sobic004G226800 Sobic004G232800--Sobic004G226800 Sobic002G113900 Sobic002G113900 Sobic004G232800--Sobic002G113900 Sobic009G199700 Sobic009G199700 Sobic003G127300--Sobic009G199700 Sobic001G364600 Sobic001G364600 Sobic003G127300--Sobic001G364600 Sobic002G298300 Sobic002G298300 Sobic003G127300--Sobic002G298300 Sobic001G341500 Sobic001G341500 Sobic003G127300--Sobic001G341500 Sobic004G060600 Sobic004G060600 Sobic003G127300--Sobic004G060600 Sobic003G127300--Sobic004G074300 Sobic002G242200 Sobic002G242200 Sobic003G127300--Sobic002G242200 Sobic003G405900 Sobic003G405900 Sobic003G127300--Sobic003G405900 Sobic003G127300--Sobic008G137600 Sobic003G178900--Sobic004G356900 Sobic001G082100 Sobic001G082100 Sobic003G178900--Sobic001G082100 Sobic009G138700 Sobic009G138700 Sobic003G178900--Sobic009G138700 Sobic006G044600 Sobic006G044600 Sobic003G178900--Sobic006G044600 Sobic010G209000 Sobic010G209000 Sobic003G178900--Sobic010G209000 Sobic002G394600 Sobic002G394600 Sobic003G178900--Sobic002G394600 Sobic003G178900--Sobic004G232800 Sobic001G360200 Sobic001G360200 Sobic003G178900--Sobic001G360200 Sobic003G178900--Sobic009G192000
Octagon: transcription factors


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