Gene annotation
Transcriptome id Sobic.002G067600.1,Sobic.002G067600.2
Synonym Sb02g005670
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XCI6
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF332
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07810 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g39560.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045297 , Zm00025a045294 , Zm00025a015035 , Zm00025a045296 , Zm00025a048540 , Zm00025a016038
Brachypodium PNT74860 , KQK15497 , KQK15498 , KQK15499
Barley -
Wheat TraesCS2D02G197500 , TraesCS2D02G197500 , TraesCS2D02G197500 , TraesCS2B02G216600 , TraesCS2B02G216600 , TraesCS2A02G190400
Populus -


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cDNA sequences
Sobic.002G067600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G067100 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
2 Sobic.001G127000 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
3 Sobic.002G055100 expressed protein -
4 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
5 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
6 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
7 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
8 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
9 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
10 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
11 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
12 Sobic.007G162800 expressed protein -
13 Sobic.004G068500 CUE domain containing protein, expressed -
14 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
15 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
16 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
17 Sobic.003G400100 leaf senescence related protein, putative, expressed -
18 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
19 Sobic.007G077400 dehydrogenase, putative, expressed K07512: MECR, mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase
20 Sobic.009G229600 tRNA-binding arm, putative, expressed -


Gene co-expression network
sample Sobic002G067600 Sobic002G067600 Sobic002G067100 Sobic002G067100 Sobic002G067600--Sobic002G067100 Sobic001G127000 Sobic001G127000 Sobic002G067600--Sobic001G127000 Sobic002G055100 Sobic002G055100 Sobic002G067600--Sobic002G055100 Sobic006G052500 Sobic006G052500 Sobic002G067600--Sobic006G052500 Sobic009G219000 Sobic009G219000 Sobic002G067600--Sobic009G219000 Sobic007G006900 Sobic007G006900 Sobic002G067600--Sobic007G006900 Sobic006G126100 Sobic006G126100 Sobic002G067600--Sobic006G126100 Sobic003G126600 Sobic003G126600 Sobic002G067600--Sobic003G126600 Sobic003G051200 Sobic003G051200 Sobic002G067600--Sobic003G051200 Sobic002G067100--Sobic002G067600 Sobic002G067100--Sobic006G052500 Sobic002G067100--Sobic001G127000 Sobic001G262900 Sobic001G262900 Sobic002G067100--Sobic001G262900 Sobic003G142700 Sobic003G142700 Sobic002G067100--Sobic003G142700 Sobic003G084750 Sobic003G084750 Sobic002G067100--Sobic003G084750 Sobic002G067100--Sobic003G051200 Sobic006G174975 Sobic006G174975 Sobic002G067100--Sobic006G174975 Sobic007G010000 Sobic007G010000 Sobic002G067100--Sobic007G010000 Sobic009G257200 Sobic009G257200 Sobic001G127000--Sobic009G257200 Sobic002G361300 Sobic002G361300 Sobic001G127000--Sobic002G361300 Sobic001G127000--Sobic002G067600 Sobic003G270600 Sobic003G270600 Sobic001G127000--Sobic003G270600 Sobic003G187200 Sobic003G187200 Sobic001G127000--Sobic003G187200 Sobic004G003501 Sobic004G003501 Sobic001G127000--Sobic004G003501 Sobic001G127000--Sobic006G126100 Sobic007G120500 Sobic007G120500 Sobic001G127000--Sobic007G120500 Sobic006G194500 Sobic006G194500 Sobic001G127000--Sobic006G194500 Sobic002G055100--Sobic002G067600 Sobic006G034800 Sobic006G034800 Sobic002G055100--Sobic006G034800 Sobic003G400100 Sobic003G400100 Sobic002G055100--Sobic003G400100 Sobic001G105100 Sobic001G105100 Sobic002G055100--Sobic001G105100 Sobic006G257001 Sobic006G257001 Sobic002G055100--Sobic006G257001 Sobic001G067900 Sobic001G067900 Sobic002G055100--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic002G055100--Sobic009G033900 Sobic003G219500 Sobic003G219500 Sobic002G055100--Sobic003G219500 Sobic006G183000 Sobic006G183000 Sobic002G055100--Sobic006G183000 Sobic002G310200 Sobic002G310200 Sobic006G052500--Sobic002G310200 Sobic006G052500--Sobic009G219000 Sobic009G042700 Sobic009G042700 Sobic006G052500--Sobic009G042700 Sobic006G052500--Sobic002G067600 Sobic007G203500 Sobic007G203500 Sobic006G052500--Sobic007G203500 Sobic006G052800 Sobic006G052800 Sobic006G052500--Sobic006G052800 Sobic010G053800 Sobic010G053800 Sobic006G052500--Sobic010G053800 Sobic007G134600 Sobic007G134600 Sobic006G052500--Sobic007G134600 Sobic010G056000 Sobic010G056000 Sobic006G052500--Sobic010G056000 Sobic001G541100 Sobic001G541100 Sobic009G219000--Sobic001G541100 Sobic001G323000 Sobic001G323000 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G138100 Sobic009G138100 Sobic009G219000--Sobic009G138100 Sobic001G105500 Sobic001G105500 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic002G134600 Sobic002G134600 Sobic007G006900--Sobic002G134600 Sobic001G425800 Sobic001G425800 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic004G004300 Sobic004G004300 Sobic006G126100--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic006G126100--Sobic008G004600 Sobic004G039600 Sobic004G039600 Sobic006G126100--Sobic004G039600 Sobic001G534800 Sobic001G534800 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G012500 Sobic006G012500 Sobic006G126100--Sobic006G012500 Sobic004G135400 Sobic004G135400 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G208500 Sobic006G208500 Sobic006G126100--Sobic006G208500 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic009G229600 Sobic009G229600 Sobic003G126600--Sobic009G229600 Sobic003G187500 Sobic003G187500 Sobic003G126600--Sobic003G187500 Sobic003G126600--Sobic010G053800 Sobic001G518400 Sobic001G518400 Sobic003G126600--Sobic001G518400 Sobic001G369000 Sobic001G369000 Sobic003G126600--Sobic001G369000 Sobic003G126600--Sobic003G187200 Sobic004G072100 Sobic004G072100 Sobic003G126600--Sobic004G072100 Sobic003G248500 Sobic003G248500 Sobic003G051200--Sobic003G248500 Sobic004G283000 Sobic004G283000 Sobic003G051200--Sobic004G283000 Sobic001G390500 Sobic001G390500 Sobic003G051200--Sobic001G390500 Sobic002G378200 Sobic002G378200 Sobic003G051200--Sobic002G378200 Sobic007G111100 Sobic007G111100 Sobic003G051200--Sobic007G111100 Sobic002G365100 Sobic002G365100 Sobic003G051200--Sobic002G365100 Sobic002G388200 Sobic002G388200 Sobic003G051200--Sobic002G388200 Sobic001G083600 Sobic001G083600 Sobic003G051200--Sobic001G083600 Sobic003G051200--Sobic001G371200
Octagon: transcription factors


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