Gene annotation
Transcriptome id Sobic.002G067100.1
Synonym Sb02g005620
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XC00
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF332
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G07810 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g39560.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045297 , Zm00025a045294 , Zm00025a015035 , Zm00025a045296 , Zm00025a048540 , Zm00025a016038
Brachypodium PNT74860 , KQK15497 , KQK15498 , KQK15499
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
2 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
3 Sobic.001G127000 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
4 Sobic.001G262900 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K10801: methyl-CpG-binding domain protein 4
5 Sobic.003G142700 expressed protein -
6 Sobic.003G084750 - -
7 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
8 Sobic.006G174975 - -
9 Sobic.007G010000 OsFBL6 - F-box domain and LRR containing protein, expressed -
10 Sobic.004G003501 - -
11 Sobic.003G392550 - -
12 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
13 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
14 Sobic.001G285800 expressed protein -
15 Sobic.008G129100 expressed protein -
16 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
17 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
18 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.004G010800 - -
20 Sobic.008G020200 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase


Gene co-expression network
sample Sobic002G067100 Sobic002G067100 Sobic002G067600 Sobic002G067600 Sobic002G067100--Sobic002G067600 Sobic006G052500 Sobic006G052500 Sobic002G067100--Sobic006G052500 Sobic001G127000 Sobic001G127000 Sobic002G067100--Sobic001G127000 Sobic001G262900 Sobic001G262900 Sobic002G067100--Sobic001G262900 Sobic003G142700 Sobic003G142700 Sobic002G067100--Sobic003G142700 Sobic003G084750 Sobic003G084750 Sobic002G067100--Sobic003G084750 Sobic003G051200 Sobic003G051200 Sobic002G067100--Sobic003G051200 Sobic006G174975 Sobic006G174975 Sobic002G067100--Sobic006G174975 Sobic007G010000 Sobic007G010000 Sobic002G067100--Sobic007G010000 Sobic002G067600--Sobic002G067100 Sobic002G067600--Sobic001G127000 Sobic002G055100 Sobic002G055100 Sobic002G067600--Sobic002G055100 Sobic002G067600--Sobic006G052500 Sobic009G219000 Sobic009G219000 Sobic002G067600--Sobic009G219000 Sobic007G006900 Sobic007G006900 Sobic002G067600--Sobic007G006900 Sobic006G126100 Sobic006G126100 Sobic002G067600--Sobic006G126100 Sobic003G126600 Sobic003G126600 Sobic002G067600--Sobic003G126600 Sobic002G067600--Sobic003G051200 Sobic002G310200 Sobic002G310200 Sobic006G052500--Sobic002G310200 Sobic006G052500--Sobic009G219000 Sobic009G042700 Sobic009G042700 Sobic006G052500--Sobic009G042700 Sobic006G052500--Sobic002G067600 Sobic007G203500 Sobic007G203500 Sobic006G052500--Sobic007G203500 Sobic006G052800 Sobic006G052800 Sobic006G052500--Sobic006G052800 Sobic010G053800 Sobic010G053800 Sobic006G052500--Sobic010G053800 Sobic007G134600 Sobic007G134600 Sobic006G052500--Sobic007G134600 Sobic010G056000 Sobic010G056000 Sobic006G052500--Sobic010G056000 Sobic009G257200 Sobic009G257200 Sobic001G127000--Sobic009G257200 Sobic002G361300 Sobic002G361300 Sobic001G127000--Sobic002G361300 Sobic001G127000--Sobic002G067600 Sobic003G270600 Sobic003G270600 Sobic001G127000--Sobic003G270600 Sobic003G187200 Sobic003G187200 Sobic001G127000--Sobic003G187200 Sobic004G003501 Sobic004G003501 Sobic001G127000--Sobic004G003501 Sobic001G127000--Sobic006G126100 Sobic007G120500 Sobic007G120500 Sobic001G127000--Sobic007G120500 Sobic006G194500 Sobic006G194500 Sobic001G127000--Sobic006G194500 Sobic001G287101 Sobic001G287101 Sobic001G262900--Sobic001G287101 Sobic007G037301 Sobic007G037301 Sobic001G262900--Sobic007G037301 Sobic003G374500 Sobic003G374500 Sobic001G262900--Sobic003G374500 Sobic004G121000 Sobic004G121000 Sobic001G262900--Sobic004G121000 Sobic002G224450 Sobic002G224450 Sobic001G262900--Sobic002G224450 Sobic004G152601 Sobic004G152601 Sobic001G262900--Sobic004G152601 Sobic003G436900 Sobic003G436900 Sobic001G262900--Sobic003G436900 Sobic003G366850 Sobic003G366850 Sobic001G262900--Sobic003G366850 Sobic004G332000 Sobic004G332000 Sobic001G262900--Sobic004G332000 Sobic003G142700--Sobic003G051200 Sobic003G248500 Sobic003G248500 Sobic003G142700--Sobic003G248500 Sobic004G283000 Sobic004G283000 Sobic003G142700--Sobic004G283000 Sobic009G225200 Sobic009G225200 Sobic003G142700--Sobic009G225200 Sobic003G258900 Sobic003G258900 Sobic003G142700--Sobic003G258900 Sobic003G045400 Sobic003G045400 Sobic003G142700--Sobic003G045400 Sobic002G313500 Sobic002G313500 Sobic003G142700--Sobic002G313500 Sobic007G007900 Sobic007G007900 Sobic003G142700--Sobic007G007900 Sobic003G442000 Sobic003G442000 Sobic003G142700--Sobic003G442000 Sobic009G032300 Sobic009G032300 Sobic003G084750--Sobic009G032300 Sobic008G129100 Sobic008G129100 Sobic003G084750--Sobic008G129100 Sobic006G130200 Sobic006G130200 Sobic003G084750--Sobic006G130200 Sobic010G174800 Sobic010G174800 Sobic003G084750--Sobic010G174800 Sobic001G109500 Sobic001G109500 Sobic003G084750--Sobic001G109500 Sobic003G084750--Sobic003G051200 Sobic010G264400 Sobic010G264400 Sobic003G084750--Sobic010G264400 Sobic005G180700 Sobic005G180700 Sobic003G084750--Sobic005G180700 Sobic004G152000 Sobic004G152000 Sobic003G084750--Sobic004G152000 Sobic003G051200--Sobic003G248500 Sobic003G051200--Sobic004G283000 Sobic001G390500 Sobic001G390500 Sobic003G051200--Sobic001G390500 Sobic002G378200 Sobic002G378200 Sobic003G051200--Sobic002G378200 Sobic007G111100 Sobic007G111100 Sobic003G051200--Sobic007G111100 Sobic002G365100 Sobic002G365100 Sobic003G051200--Sobic002G365100 Sobic002G388200 Sobic002G388200 Sobic003G051200--Sobic002G388200 Sobic001G083600 Sobic001G083600 Sobic003G051200--Sobic001G083600 Sobic001G371200 Sobic001G371200 Sobic003G051200--Sobic001G371200 Sobic002G110300 Sobic002G110300 Sobic006G174975--Sobic002G110300 Sobic006G174975--Sobic002G067100 Sobic005G096700 Sobic005G096700 Sobic006G174975--Sobic005G096700 Sobic006G174975--Sobic004G003501 Sobic003G043800 Sobic003G043800 Sobic006G174975--Sobic003G043800 Sobic006G174975--Sobic002G067600 Sobic006G174975--Sobic007G006900 Sobic003G119700 Sobic003G119700 Sobic006G174975--Sobic003G119700 Sobic003G392550 Sobic003G392550 Sobic006G174975--Sobic003G392550 Sobic001G319400 Sobic001G319400 Sobic007G010000--Sobic001G319400 Sobic007G010000--Sobic001G127000 Sobic009G229600 Sobic009G229600 Sobic007G010000--Sobic009G229600 Sobic003G036500 Sobic003G036500 Sobic007G010000--Sobic003G036500 Sobic008G123500 Sobic008G123500 Sobic007G010000--Sobic008G123500 Sobic007G010000--Sobic003G126600 Sobic004G072100 Sobic004G072100 Sobic007G010000--Sobic004G072100 Sobic001G096000 Sobic001G096000 Sobic007G010000--Sobic001G096000 Sobic003G427600 Sobic003G427600 Sobic007G010000--Sobic003G427600
Octagon: transcription factors


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