Gene annotation
Transcriptome id Sobic.001G262900.1
Synonym Sb01g024773
Functional annotation hhH-GPD superfamily base excision DNA repair protein, putative, expressed
UniProt C5WNB1
Pfam PF00730
Panther DB PTHR15074:SF0 PTHR15074
NCBI CDD -
KEGG Orthology K10801; methyl-CpG-binding domain protein 4
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT3G07930 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os09g01290.1 : hhH-GPD superfamily base excision DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a040583
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G262900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G287101 - -
2 Sobic.007G037301 - -
3 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.004G121000 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
5 Sobic.002G224450 - -
6 Sobic.004G152601 - -
7 Sobic.003G436900 OsFBX178 - F-box domain containing protein, expressed -
8 Sobic.003G366850 - -
9 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
10 Sobic.004G204400 OsFBX309 - F-box domain containing protein, expressed -
11 Sobic.008G025900 expressed protein -
12 Sobic.002G114400 GAGA-binding protein, putative, expressed -
13 Sobic.003G266700 expressed protein -
14 Sobic.005G142200 expressed protein -
15 Sobic.008G189400 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.010G144000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
17 Sobic.010G056000 GAGA-binding protein, putative, expressed -
18 Sobic.008G065400 - -
19 Sobic.001G022100 expressed protein -
20 Sobic.003G429500 - -


Gene co-expression network
sample Sobic001G262900 Sobic001G262900 Sobic001G287101 Sobic001G287101 Sobic001G262900--Sobic001G287101 Sobic007G037301 Sobic007G037301 Sobic001G262900--Sobic007G037301 Sobic003G374500 Sobic003G374500 Sobic001G262900--Sobic003G374500 Sobic004G121000 Sobic004G121000 Sobic001G262900--Sobic004G121000 Sobic002G224450 Sobic002G224450 Sobic001G262900--Sobic002G224450 Sobic004G152601 Sobic004G152601 Sobic001G262900--Sobic004G152601 Sobic003G436900 Sobic003G436900 Sobic001G262900--Sobic003G436900 Sobic003G366850 Sobic003G366850 Sobic001G262900--Sobic003G366850 Sobic004G332000 Sobic004G332000 Sobic001G262900--Sobic004G332000 Sobic001G287101--Sobic002G224450 Sobic001G287101--Sobic004G121000 Sobic002G400900 Sobic002G400900 Sobic001G287101--Sobic002G400900 Sobic008G025900 Sobic008G025900 Sobic001G287101--Sobic008G025900 Sobic001G240400 Sobic001G240400 Sobic001G287101--Sobic001G240400 Sobic005G110427 Sobic005G110427 Sobic001G287101--Sobic005G110427 Sobic004G132150 Sobic004G132150 Sobic001G287101--Sobic004G132150 Sobic001G287101--Sobic003G366850 Sobic001G287101--Sobic003G436900 Sobic010G089100 Sobic010G089100 Sobic007G037301--Sobic010G089100 Sobic007G037301--Sobic002G224450 Sobic007G037301--Sobic003G374500 Sobic007G037301--Sobic003G366850 Sobic007G037301--Sobic001G287101 Sobic002G110300 Sobic002G110300 Sobic007G037301--Sobic002G110300 Sobic007G037301--Sobic001G262900 Sobic003G429500 Sobic003G429500 Sobic007G037301--Sobic003G429500 Sobic007G037301--Sobic002G400900 Sobic008G065400 Sobic008G065400 Sobic003G374500--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic003G374500--Sobic001G278600 Sobic003G374500--Sobic003G366850 Sobic003G374500--Sobic007G037301 Sobic005G079700 Sobic005G079700 Sobic003G374500--Sobic005G079700 Sobic001G140200 Sobic001G140200 Sobic003G374500--Sobic001G140200 Sobic003G374500--Sobic001G262900 Sobic003G266700 Sobic003G266700 Sobic003G374500--Sobic003G266700 Sobic002G431200 Sobic002G431200 Sobic003G374500--Sobic002G431200 Sobic005G142200 Sobic005G142200 Sobic004G121000--Sobic005G142200 Sobic004G121000--Sobic003G436900 Sobic004G121000--Sobic001G240400 Sobic004G121000--Sobic002G224450 Sobic004G200866 Sobic004G200866 Sobic004G121000--Sobic004G200866 Sobic001G305400 Sobic001G305400 Sobic004G121000--Sobic001G305400 Sobic005G221425 Sobic005G221425 Sobic004G121000--Sobic005G221425 Sobic004G317600 Sobic004G317600 Sobic004G121000--Sobic004G317600 Sobic002G221200 Sobic002G221200 Sobic004G121000--Sobic002G221200 Sobic002G224450--Sobic008G025900 Sobic002G224450--Sobic004G121000 Sobic002G224450--Sobic001G240400 Sobic002G224450--Sobic005G221425 Sobic002G224450--Sobic001G287101 Sobic005G139800 Sobic005G139800 Sobic002G224450--Sobic005G139800 Sobic009G209800 Sobic009G209800 Sobic002G224450--Sobic009G209800 Sobic002G224450--Sobic005G110427 Sobic002G224450--Sobic003G436900 Sobic008G106400 Sobic008G106400 Sobic004G152601--Sobic008G106400 Sobic004G152601--Sobic008G065400 Sobic003G201850 Sobic003G201850 Sobic004G152601--Sobic003G201850 Sobic004G010800 Sobic004G010800 Sobic004G152601--Sobic004G010800 Sobic004G152601--Sobic001G262900 Sobic004G152601--Sobic003G429500 Sobic010G184900 Sobic010G184900 Sobic004G152601--Sobic010G184900 Sobic010G148750 Sobic010G148750 Sobic004G152601--Sobic010G148750 Sobic008G045600 Sobic008G045600 Sobic004G152601--Sobic008G045600 Sobic003G436900--Sobic005G142200 Sobic003G436900--Sobic004G121000 Sobic003G436900--Sobic001G240400 Sobic010G144000 Sobic010G144000 Sobic003G436900--Sobic010G144000 Sobic005G061100 Sobic005G061100 Sobic003G436900--Sobic005G061100 Sobic003G436900--Sobic002G221200 Sobic003G436900--Sobic001G305400 Sobic009G101600 Sobic009G101600 Sobic003G436900--Sobic009G101600 Sobic003G436900--Sobic004G317600 Sobic003G366850--Sobic004G121000 Sobic003G366850--Sobic008G065400 Sobic001G261480 Sobic001G261480 Sobic003G366850--Sobic001G261480 Sobic003G366850--Sobic003G429500 Sobic003G366850--Sobic004G200866 Sobic003G366850--Sobic002G431200 Sobic003G366850--Sobic001G278600 Sobic003G366850--Sobic005G142200 Sobic003G366850--Sobic009G101600 Sobic002G119800 Sobic002G119800 Sobic004G332000--Sobic002G119800 Sobic006G213601 Sobic006G213601 Sobic004G332000--Sobic006G213601 Sobic004G332000--Sobic001G262900 Sobic001G072200 Sobic001G072200 Sobic004G332000--Sobic001G072200 Sobic004G332000--Sobic003G374500 Sobic006G255100 Sobic006G255100 Sobic004G332000--Sobic006G255100 Sobic004G332000--Sobic004G152601 Sobic007G136700 Sobic007G136700 Sobic004G332000--Sobic007G136700 Sobic002G067100 Sobic002G067100 Sobic004G332000--Sobic002G067100
Octagon: transcription factors


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