Gene annotation
Transcriptome id Sobic.010G024700.2,Sobic.010G024700.3
Synonym
Functional annotation expressed protein
UniProt A0A1W0VR53
Pfam PF12274
Panther DB PTHR33326 PTHR33326:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g04470.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
2 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
3 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
4 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
5 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
6 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
7 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
8 Sobic.001G248200 OsPOP22 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
9 Sobic.006G036900 vignain precursor, putative, expressed -
10 Sobic.007G216201 - -
11 Sobic.005G095660 - K04733: interleukin-1 receptor-associated kinase 4
12 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
13 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
14 Sobic.001G359500 cytochrome P450, putative, expressed -
15 Sobic.009G250200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
16 Sobic.002G122200 - -
17 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
19 Sobic.001G520400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING-H2 finger protein ATL2A, putative, expressed -
20 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase


Gene co-expression network
sample Sobic010G024700 Sobic010G024700 Sobic002G217133 Sobic002G217133 Sobic010G024700--Sobic002G217133 Sobic004G113300 Sobic004G113300 Sobic010G024700--Sobic004G113300 Sobic005G130400 Sobic005G130400 Sobic010G024700--Sobic005G130400 Sobic002G190500 Sobic002G190500 Sobic010G024700--Sobic002G190500 Sobic002G324000 Sobic002G324000 Sobic010G024700--Sobic002G324000 Sobic001G248200 Sobic001G248200 Sobic010G024700--Sobic001G248200 Sobic006G036900 Sobic006G036900 Sobic010G024700--Sobic006G036900 Sobic002G217133--Sobic002G217133 Sobic002G217133--Sobic005G130400 Sobic002G217133--Sobic006G036900 Sobic002G217133--Sobic010G024700 Sobic002G217133--Sobic004G113300 Sobic002G217133--Sobic002G190500 Sobic005G196200 Sobic005G196200 Sobic002G217133--Sobic005G196200 Sobic004G050200 Sobic004G050200 Sobic002G217133--Sobic004G050200 Sobic004G113300--Sobic002G324000 Sobic004G113300--Sobic002G190500 Sobic004G113300--Sobic004G050200 Sobic003G184900 Sobic003G184900 Sobic004G113300--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic004G113300--Sobic008G079300 Sobic004G113300--Sobic005G130400 Sobic001G274800 Sobic001G274800 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G060900 Sobic004G060900 Sobic004G113300--Sobic004G060900 Sobic005G130400--Sobic002G324000 Sobic005G130400--Sobic002G190500 Sobic005G130400--Sobic004G113300 Sobic005G130400--Sobic004G050200 Sobic005G130400--Sobic002G217133 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic002G324000--Sobic004G060900 Sobic005G095660 Sobic005G095660 Sobic001G248200--Sobic005G095660 Sobic006G030600 Sobic006G030600 Sobic001G248200--Sobic006G030600 Sobic001G396000 Sobic001G396000 Sobic001G248200--Sobic001G396000 Sobic010G203200 Sobic010G203200 Sobic001G248200--Sobic010G203200 Sobic004G034600 Sobic004G034600 Sobic001G248200--Sobic004G034600 Sobic008G081800 Sobic008G081800 Sobic001G248200--Sobic008G081800 Sobic004G131040 Sobic004G131040 Sobic001G248200--Sobic004G131040 Sobic007G010700 Sobic007G010700 Sobic001G248200--Sobic007G010700 Sobic001G248300 Sobic001G248300 Sobic001G248200--Sobic001G248300 Sobic006G036900--Sobic004G050200 Sobic004G230600 Sobic004G230600 Sobic006G036900--Sobic004G230600 Sobic006G036900--Sobic004G113300 Sobic006G036900--Sobic002G190500 Sobic001G182500 Sobic001G182500 Sobic006G036900--Sobic001G182500 Sobic006G036900--Sobic002G217133 Sobic006G036900--Sobic005G130400
Octagon: transcription factors


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