Gene annotation
| Transcriptome id | Sobic.003G235400.1,Sobic.003G235400.2,Sobic.003G235400.3 |
|---|---|
| Synonym | ATPCME, PCME, Sb03g029280 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) ATPCME, putative, expressed |
| UniProt | A0A1B6Q4Z1 , C5XF40 , A0A1W0VYN0 |
| Pfam | PF00135 |
| Panther DB | PTHR23024 PTHR23024:SF221 |
| NCBI CDD | KOG1515; Arylacetamide deacetylase |
| KEGG Orthology | K15889; prenylcysteine alpha-carboxyl methylesterase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G15860 : prenylcysteine methylesterase |
|---|---|
| RAP-DB (Rice) | LOC_Os01g45460.1,LOC_Os05g50170.1 : serine esterase, putative, expressed,ATPCME, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028278 |
| Brachypodium | PNT72475 |
| Barley | HORVU3Hr1G057530.11 , HORVU3Hr1G057530.10 , HORVU3Hr1G057530.13 , HORVU3Hr1G057530.12 , HORVU3Hr1G057530.15 , HORVU3Hr1G057530.14 , HORVU3Hr1G057530.16 , HORVU3Hr1G057530.9 , HORVU3Hr1G057530.8 , HORVU3Hr1G057530.5 , HORVU3Hr1G057530.4 , HORVU3Hr1G057530.7 , HORVU3Hr1G057530.6 , HORVU3Hr1G057530.1 , HORVU3Hr1G057530.3 , HORVU3Hr1G057530.2 |
| Wheat | TraesCS3B02G260300 , TraesCS3B02G260300 , TraesCS3D02G222200 , TraesCS3D02G222200 , TraesCS3A02G231000 , TraesCS3A02G231000 |
| Populus | PNS96338 , PNS96339 , PNS22959 |
JBrowse
| Sobic.003G235400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G261600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed | K01188: beta-glucosidase |
| 2 | Sobic.006G012000 | expressed protein | - |
| 3 | Sobic.007G053100 | amino acid permease family protein, putative, expressed | - |
| 4 | Sobic.002G075000 | receptor kinase, putative, expressed | - |
| 5 | Sobic.004G188800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.001G125400 | ethylene-insensitive protein, putative, expressed | - |
| 7 | Sobic.006G251500 | inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed | K10572: inositol-pentakisphosphate 2-kinase |
| 8 | Sobic.003G384600 | expressed protein | - |
| 9 | Sobic.003G427300 | uridine 5-monophosphate synthase, putative, expressed | K13421: uridine monophosphate synthetase |
| 10 | Sobic.001G125300 | ethylene-insensitive protein, putative, expressed | K14513: ethylene-insensitive protein 2 |
| 11 | Sobic.002G266300 | Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed | - |
| 12 | Sobic.010G170000 | Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed | K11155: diacylglycerol O-acyltransferase 1 |
| 13 | Sobic.001G386600 | homeobox domain containing protein, expressed | - |
| 14 | Sobic.005G045700 | PHD-finger family protein, expressed | - |
| 15 | Sobic.006G053200 | - | - |
| 16 | Sobic.004G123400 | MYB family transcription factor, putative, expressed | K09420: MYB, transcriptional activator Myb |
| 17 | Sobic.005G134700 | chalcone and stilbene synthases, putative, expressed | - |
| 18 | Sobic.002G405700 | expressed protein | - |
| 19 | Sobic.001G508200 | multidrug resistance-associated protein, putative, expressed | - |
| 20 | Sobic.001G046500 | C-methyltransferase, putative, expressed | K00559: SMT1, sterol 24-C-methyltransferase |
Gene co-expression network
Octagon: transcription factors
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