Gene annotation
Transcriptome id Sobic.005G045700.4,Sobic.005G045700.2,Sobic.005G045700.1,Sobic.005G045700.3
Synonym
Functional annotation PHD-finger family protein, expressed
UniProt A0A1Z5RGN1 , A0A1B6PQ56 , H0I4B1 , A0A1Z5RHA5 , A0A1Z5RGN9
Pfam -
Panther DB PTHR33304 PTHR33304:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43770 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os11g06130.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a012925
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.005G045700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
2 Sobic.007G053100 amino acid permease family protein, putative, expressed -
3 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
4 Sobic.002G054400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
5 Sobic.003G368901 - -
6 Sobic.001G125300 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
7 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
8 Sobic.008G191850 - -
9 Sobic.006G262501 - -
10 Sobic.002G366300 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.008G165300 Protein kinase domain containing protein, expressed -
12 Sobic.010G264900 OsFBX79 - F-box domain containing protein, expressed -
13 Sobic.005G139300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amidase, putative, expressed -
14 Sobic.001G125400 ethylene-insensitive protein, putative, expressed -
15 Sobic.010G179300 - -
16 Sobic.005G165800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed -
17 Sobic.006G053200 - -
18 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
19 Sobic.001G534200 - -
20 Sobic.003G398200 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic005G045700 Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic005G045700--Sobic002G127900 Sobic007G053100 Sobic007G053100 Sobic005G045700--Sobic007G053100 Sobic002G266300 Sobic002G266300 Sobic005G045700--Sobic002G266300 Sobic002G054400 Sobic002G054400 Sobic005G045700--Sobic002G054400 Sobic003G368901 Sobic003G368901 Sobic005G045700--Sobic003G368901 Sobic001G125300 Sobic001G125300 Sobic005G045700--Sobic001G125300 Sobic009G012600 Sobic009G012600 Sobic005G045700--Sobic009G012600 Sobic008G191850 Sobic008G191850 Sobic005G045700--Sobic008G191850 Sobic006G262501 Sobic006G262501 Sobic005G045700--Sobic006G262501 Sobic002G127900--Sobic005G045700 Sobic008G165300 Sobic008G165300 Sobic002G127900--Sobic008G165300 Sobic002G127900--Sobic007G053100 Sobic002G127900--Sobic003G368901 Sobic002G127900--Sobic002G266300 Sobic002G127900--Sobic006G262501 Sobic010G264900 Sobic010G264900 Sobic002G127900--Sobic010G264900 Sobic009G155900 Sobic009G155900 Sobic002G127900--Sobic009G155900 Sobic002G127900--Sobic001G125300 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic006G053200 Sobic006G053200 Sobic007G053100--Sobic006G053200 Sobic001G125400 Sobic001G125400 Sobic007G053100--Sobic001G125400 Sobic007G053100--Sobic005G045700 Sobic004G033200 Sobic004G033200 Sobic007G053100--Sobic004G033200 Sobic003G427300 Sobic003G427300 Sobic007G053100--Sobic003G427300 Sobic004G066500 Sobic004G066500 Sobic007G053100--Sobic004G066500 Sobic007G053100--Sobic002G127900 Sobic006G217800 Sobic006G217800 Sobic002G266300--Sobic006G217800 Sobic005G021000 Sobic005G021000 Sobic002G266300--Sobic005G021000 Sobic001G534200 Sobic001G534200 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic002G266300--Sobic001G125400 Sobic009G025500 Sobic009G025500 Sobic002G266300--Sobic009G025500 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic006G208000 Sobic006G208000 Sobic002G266300--Sobic006G208000 Sobic002G054400--Sobic005G045700 Sobic002G054400--Sobic008G191850 Sobic002G366300 Sobic002G366300 Sobic002G054400--Sobic002G366300 Sobic002G054400--Sobic009G012600 Sobic002G054400--Sobic008G165300 Sobic004G123200 Sobic004G123200 Sobic002G054400--Sobic004G123200 Sobic002G054400--Sobic002G266300 Sobic004G290100 Sobic004G290100 Sobic002G054400--Sobic004G290100 Sobic008G178566 Sobic008G178566 Sobic002G054400--Sobic008G178566 Sobic003G368901--Sobic005G045700 Sobic003G368901--Sobic002G127900 Sobic003G368901--Sobic006G262501 Sobic003G368901--Sobic008G165300 Sobic005G139300 Sobic005G139300 Sobic003G368901--Sobic005G139300 Sobic003G368901--Sobic010G264900 Sobic004G031300 Sobic004G031300 Sobic003G368901--Sobic004G031300 Sobic003G368901--Sobic002G266300 Sobic003G368901--Sobic007G053100 Sobic003G098800 Sobic003G098800 Sobic001G125300--Sobic003G098800 Sobic003G437400 Sobic003G437400 Sobic001G125300--Sobic003G437400 Sobic001G380800 Sobic001G380800 Sobic001G125300--Sobic001G380800 Sobic004G301800 Sobic004G301800 Sobic001G125300--Sobic004G301800 Sobic003G295600 Sobic003G295600 Sobic001G125300--Sobic003G295600 Sobic002G393100 Sobic002G393100 Sobic001G125300--Sobic002G393100 Sobic010G131500 Sobic010G131500 Sobic001G125300--Sobic010G131500 Sobic010G142900 Sobic010G142900 Sobic001G125300--Sobic010G142900 Sobic001G125300--Sobic006G053200 Sobic007G050800 Sobic007G050800 Sobic009G012600--Sobic007G050800 Sobic009G012600--Sobic005G045700 Sobic006G226000 Sobic006G226000 Sobic009G012600--Sobic006G226000 Sobic007G192200 Sobic007G192200 Sobic009G012600--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic009G012600--Sobic009G002200 Sobic005G036200 Sobic005G036200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic009G012600--Sobic006G262501 Sobic009G012600--Sobic008G191850 Sobic008G191850--Sobic002G266300 Sobic008G191850--Sobic004G066500 Sobic008G191850--Sobic005G021000 Sobic008G191850--Sobic001G534200 Sobic002G010000 Sobic002G010000 Sobic008G191850--Sobic002G010000 Sobic008G191850--Sobic006G217800 Sobic001G336200 Sobic001G336200 Sobic008G191850--Sobic001G336200 Sobic004G347500 Sobic004G347500 Sobic008G191850--Sobic004G347500 Sobic008G191850--Sobic007G053100 Sobic006G262501--Sobic005G045700 Sobic006G262501--Sobic002G127900 Sobic006G262501--Sobic005G036200 Sobic008G118100 Sobic008G118100 Sobic006G262501--Sobic008G118100 Sobic006G262501--Sobic003G368901 Sobic006G262501--Sobic009G012600 Sobic006G262501--Sobic007G050800 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000
Octagon: transcription factors


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