Gene annotation
Transcriptome id Sobic.005G139300.2,Sobic.005G139300.3,Sobic.005G139300.1
Synonym Sb05g020350
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amidase, putative, expressed
UniProt A0A1B6PSD5 , A0A1Z5RJG4 , A0A1B6PSC3
Pfam PF01425
Panther DB PTHR11895 PTHR11895:SF73
NCBI CDD KOG1211; Amidases
KEGG Orthology -
Gene Ontology GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor


Orthologs (automatic annotation)
TAIR AT5G07360 : Amidase family protein
RAP-DB (Rice) LOC_Os11g33090.1 : amidase, putative, expressed
MaizeGDB (Corn) Zm00025a033571
Brachypodium PNT63531 , PNT63533 , PNT63532 , PNT63535 , PNT63534 , PNT63536 , KQJ88326 , KQJ88325 , KQJ88324 , KQJ88323
Barley HORVU3Hr1G088210.5 , HORVU3Hr1G088210.7 , HORVU3Hr1G088210.1 , HORVU3Hr1G088210.3 , HORVU3Hr1G088210.8 , HORVU3Hr1G088210.9 , HORVU3Hr1G088210.14 , HORVU3Hr1G088210.12 , HORVU3Hr1G088210.13 , HORVU3Hr1G088210.10 , HORVU3Hr1G088210.11
Wheat TraesCS3A02G347600 , TraesCS3A02G347600 , TraesCS3D02G341200 , TraesCS3D02G341200
Populus -


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cDNA sequences
Sobic.005G139300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G050900 - -
2 Sobic.007G053100 amino acid permease family protein, putative, expressed -
3 Sobic.003G419500 xylanase inhibitor, putative, expressed -
4 Sobic.009G060600 - -
5 Sobic.005G045700 PHD-finger family protein, expressed -
6 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
7 Sobic.009G250500 expressed protein -
8 Sobic.002G010000 NLI interacting factor-like phosphatase, putative, expressed -
9 Sobic.005G036200 protein of unknown function containing protein, expressed -
10 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
11 Sobic.001G125300 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
12 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
13 Sobic.003G100000 Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed K05350: beta-glucosidase
14 Sobic.006G262501 - -
15 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.006G053200 - -
17 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.003G098800 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
19 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
20 Sobic.001G254700 TPD1, putative, expressed -


Gene co-expression network
sample Sobic005G139300 Sobic005G139300 Sobic007G050900 Sobic007G050900 Sobic005G139300--Sobic007G050900 Sobic007G053100 Sobic007G053100 Sobic005G139300--Sobic007G053100 Sobic003G419500 Sobic003G419500 Sobic005G139300--Sobic003G419500 Sobic009G060600 Sobic009G060600 Sobic005G139300--Sobic009G060600 Sobic005G045700 Sobic005G045700 Sobic005G139300--Sobic005G045700 Sobic002G266300 Sobic002G266300 Sobic005G139300--Sobic002G266300 Sobic009G250500 Sobic009G250500 Sobic005G139300--Sobic009G250500 Sobic002G010000 Sobic002G010000 Sobic005G139300--Sobic002G010000 Sobic005G036200 Sobic005G036200 Sobic005G139300--Sobic005G036200 Sobic010G054800 Sobic010G054800 Sobic007G050900--Sobic010G054800 Sobic005G073700 Sobic005G073700 Sobic007G050900--Sobic005G073700 Sobic003G100000 Sobic003G100000 Sobic007G050900--Sobic003G100000 Sobic001G254700 Sobic001G254700 Sobic007G050900--Sobic001G254700 Sobic006G047700 Sobic006G047700 Sobic007G050900--Sobic006G047700 Sobic009G031800 Sobic009G031800 Sobic007G050900--Sobic009G031800 Sobic007G050900--Sobic009G250500 Sobic007G050900--Sobic003G419500 Sobic007G050900--Sobic002G010000 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic006G053200 Sobic006G053200 Sobic007G053100--Sobic006G053200 Sobic001G125400 Sobic001G125400 Sobic007G053100--Sobic001G125400 Sobic007G053100--Sobic005G045700 Sobic004G033200 Sobic004G033200 Sobic007G053100--Sobic004G033200 Sobic003G427300 Sobic003G427300 Sobic007G053100--Sobic003G427300 Sobic004G066500 Sobic004G066500 Sobic007G053100--Sobic004G066500 Sobic002G127900 Sobic002G127900 Sobic007G053100--Sobic002G127900 Sobic009G208600 Sobic009G208600 Sobic003G419500--Sobic009G208600 Sobic003G419500--Sobic009G250500 Sobic002G232900 Sobic002G232900 Sobic003G419500--Sobic002G232900 Sobic010G131500 Sobic010G131500 Sobic003G419500--Sobic010G131500 Sobic005G021000 Sobic005G021000 Sobic003G419500--Sobic005G021000 Sobic003G398200 Sobic003G398200 Sobic003G419500--Sobic003G398200 Sobic003G437400 Sobic003G437400 Sobic003G419500--Sobic003G437400 Sobic009G025500 Sobic009G025500 Sobic003G419500--Sobic009G025500 Sobic006G013300 Sobic006G013300 Sobic003G419500--Sobic006G013300 Sobic010G074940 Sobic010G074940 Sobic009G060600--Sobic010G074940 Sobic002G177600 Sobic002G177600 Sobic009G060600--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic009G060600--Sobic002G240000 Sobic009G060600--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic009G060600--Sobic004G347500 Sobic004G301800 Sobic004G301800 Sobic009G060600--Sobic004G301800 Sobic002G393100 Sobic002G393100 Sobic009G060600--Sobic002G393100 Sobic001G380800 Sobic001G380800 Sobic009G060600--Sobic001G380800 Sobic006G208000 Sobic006G208000 Sobic009G060600--Sobic006G208000 Sobic005G045700--Sobic002G127900 Sobic005G045700--Sobic007G053100 Sobic005G045700--Sobic002G266300 Sobic002G054400 Sobic002G054400 Sobic005G045700--Sobic002G054400 Sobic003G368901 Sobic003G368901 Sobic005G045700--Sobic003G368901 Sobic001G125300 Sobic001G125300 Sobic005G045700--Sobic001G125300 Sobic009G012600 Sobic009G012600 Sobic005G045700--Sobic009G012600 Sobic008G191850 Sobic008G191850 Sobic005G045700--Sobic008G191850 Sobic006G262501 Sobic006G262501 Sobic005G045700--Sobic006G262501 Sobic006G217800 Sobic006G217800 Sobic002G266300--Sobic006G217800 Sobic002G266300--Sobic005G021000 Sobic001G534200 Sobic001G534200 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic002G266300--Sobic001G125400 Sobic002G266300--Sobic009G025500 Sobic002G266300--Sobic007G053100 Sobic002G266300--Sobic003G398200 Sobic002G266300--Sobic006G208000 Sobic009G250500--Sobic010G131500 Sobic009G250500--Sobic003G398200 Sobic009G250500--Sobic003G437400 Sobic001G058800 Sobic001G058800 Sobic009G250500--Sobic001G058800 Sobic003G098800 Sobic003G098800 Sobic009G250500--Sobic003G098800 Sobic003G051400 Sobic003G051400 Sobic009G250500--Sobic003G051400 Sobic006G143600 Sobic006G143600 Sobic009G250500--Sobic006G143600 Sobic006G248100 Sobic006G248100 Sobic009G250500--Sobic006G248100 Sobic009G250500--Sobic003G100000 Sobic002G010000--Sobic009G250500 Sobic002G010000--Sobic010G131500 Sobic002G010000--Sobic003G398200 Sobic002G010000--Sobic001G254700 Sobic002G010000--Sobic003G437400 Sobic002G010000--Sobic003G100000 Sobic002G010000--Sobic003G098800 Sobic002G010000--Sobic001G534200 Sobic002G010000--Sobic003G051400 Sobic007G192200 Sobic007G192200 Sobic005G036200--Sobic007G192200 Sobic002G420400 Sobic002G420400 Sobic005G036200--Sobic002G420400 Sobic009G002200 Sobic009G002200 Sobic005G036200--Sobic009G002200 Sobic001G375800 Sobic001G375800 Sobic005G036200--Sobic001G375800 Sobic005G036200--Sobic010G054800 Sobic001G456400 Sobic001G456400 Sobic005G036200--Sobic001G456400 Sobic005G036200--Sobic009G250500 Sobic004G242200 Sobic004G242200 Sobic005G036200--Sobic004G242200 Sobic005G036200--Sobic010G131500
Octagon: transcription factors


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