Gene annotation
Transcriptome id Sobic.005G152000.2,Sobic.005G152000.1
Synonym Sb05g021590
Functional annotation aminotransferase, classes I and II, domain containing protein, expressed
UniProt A0A1B6PSM6 , A0A1B6PSM5
Pfam PF01212
Panther DB PTHR11751 PTHR11751:SF363
NCBI CDD KOG0259; Tyrosine aminotransferase
KEGG Orthology -
Gene Ontology GO:0016829; lyase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G53970 : Tyrosine transaminase family protein
RAP-DB (Rice) LOC_Os11g35040.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015736 , Zm00025a034096
Brachypodium KQJ88215
Barley HORVU1Hr1G015090.3 , HORVU1Hr1G015090.6 , HORVU1Hr1G015090.7 , HORVU1Hr1G015090.4 , HORVU1Hr1G015090.5 , HORVU1Hr1G015090.2 , HORVU1Hr1G015090.1
Wheat TraesCS1D02G073000 , TraesCS1D02G073000 , TraesCS1D02G073000 , TraesCS1B02G089000 , TraesCS1A02G070500
Populus -


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cDNA sequences
Sobic.005G152000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
2 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
3 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
4 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
6 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
7 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
8 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
9 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
10 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
11 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.006G030700 receptor kinase, putative, expressed -
13 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
14 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
15 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
16 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
17 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
18 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
19 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
20 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -


Gene co-expression network
sample Sobic005G152000 Sobic005G152000 Sobic007G186200 Sobic007G186200 Sobic005G152000--Sobic007G186200 Sobic001G069900 Sobic001G069900 Sobic005G152000--Sobic001G069900 Sobic007G068100 Sobic007G068100 Sobic005G152000--Sobic007G068100 Sobic010G205200 Sobic010G205200 Sobic005G152000--Sobic010G205200 Sobic001G325200 Sobic001G325200 Sobic005G152000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic005G152000--Sobic001G150600 Sobic003G148800 Sobic003G148800 Sobic005G152000--Sobic003G148800 Sobic006G028900 Sobic006G028900 Sobic005G152000--Sobic006G028900 Sobic001G015500 Sobic001G015500 Sobic005G152000--Sobic001G015500 Sobic007G186200--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic007G186200--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic007G186200--Sobic009G226300 Sobic007G186200--Sobic001G015500 Sobic007G186200--Sobic007G068100 Sobic003G355600 Sobic003G355600 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic004G101900 Sobic004G101900 Sobic007G186200--Sobic004G101900 Sobic009G054500 Sobic009G054500 Sobic007G186200--Sobic009G054500 Sobic001G069900--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic001G069900--Sobic006G181300 Sobic003G087200 Sobic003G087200 Sobic001G069900--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic005G178100 Sobic005G178100 Sobic001G069900--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic009G057300 Sobic009G057300 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic010G205200--Sobic003G428400 Sobic010G205200--Sobic001G069900 Sobic010G205200--Sobic006G028900 Sobic010G112300 Sobic010G112300 Sobic010G205200--Sobic010G112300 Sobic010G205200--Sobic001G015500 Sobic001G301700 Sobic001G301700 Sobic010G205200--Sobic001G301700 Sobic010G205200--Sobic001G474500 Sobic010G205200--Sobic001G325200 Sobic010G205200--Sobic007G186200 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic001G325200--Sobic003G355600 Sobic001G150600--Sobic003G087200 Sobic006G100332 Sobic006G100332 Sobic001G150600--Sobic006G100332 Sobic008G153400 Sobic008G153400 Sobic001G150600--Sobic008G153400 Sobic006G030700 Sobic006G030700 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic003G148800--Sobic006G030700 Sobic006G028900--Sobic001G325200 Sobic006G028900--Sobic009G034700 Sobic004G124200 Sobic004G124200 Sobic006G028900--Sobic004G124200 Sobic006G028900--Sobic001G015500 Sobic006G028900--Sobic008G153400 Sobic006G028900--Sobic005G178100 Sobic006G028900--Sobic010G205200 Sobic002G266000 Sobic002G266000 Sobic006G028900--Sobic002G266000 Sobic006G028900--Sobic004G101900 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic001G015500--Sobic007G186200
Octagon: transcription factors


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