Gene annotation
Transcriptome id Sobic.002G429700.1
Synonym Sb02g043940, ATAMPD, FAC1
Functional annotation AMP deaminase, putative, expressed
UniProt C5X6G2
Pfam PF00962
Panther DB PTHR11359 PTHR11359:SF8
NCBI CDD -
KEGG Orthology K01490; AMP deaminase
Gene Ontology GO:0003876; AMP deaminase activity


Orthologs (automatic annotation)
TAIR AT2G38280 : AMP deaminase, putative / myoadenylate deaminase, putative
RAP-DB (Rice) LOC_Os07g49270.1 : AMP deaminase, putative, expressed
MaizeGDB (Corn) Zm00025a049265
Brachypodium KQK14490
Barley HORVU2Hr1G014130.1 , HORVU2Hr1G014130.3 , HORVU2Hr1G014130.2 , HORVU2Hr1G014130.5 , HORVU2Hr1G014130.4 , HORVU2Hr1G014130.7 , HORVU2Hr1G014130.6 , HORVU2Hr1G014130.9 , HORVU2Hr1G014130.8 , HORVU2Hr1G014130.15 , HORVU2Hr1G014130.14 , HORVU2Hr1G014130.17 , HORVU2Hr1G014130.16 , HORVU2Hr1G014130.11 , HORVU2Hr1G014130.10 , HORVU2Hr1G014130.13 , HORVU2Hr1G014130.12 , HORVU2Hr1G014130.19 , HORVU2Hr1G014130.18 , HORVU2Hr1G014130.20
Wheat TraesCS2D02G084300 , TraesCS2D02G084300 , TraesCS2A02G087000 , TraesCS2A02G087000 , TraesCS2B02G101700
Populus PNT30832 , PNT30833 , PNT30834


JBrowse

Open New Page


cDNA sequences
Sobic.002G429700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G155900 hhH-GPD superfamily base excision DNA repair protein, expressed -
2 Sobic.003G368901 - -
3 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
5 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
6 Sobic.006G088400 OsFBX135 - F-box domain containing protein, expressed -
7 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.003G002700 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
9 Sobic.001G542300 expressed protein -
10 Sobic.007G053100 amino acid permease family protein, putative, expressed -
11 Sobic.002G127200 CRAL/TRIO domain containing protein, expressed -
12 Sobic.005G075800 rp3 protein, putative, expressed -
13 Sobic.002G316800 3\'-5\' exonuclease, putative, expressed K12951: cobalt/nickel-transporting P-type ATPase D
14 Sobic.001G338800 DEK C terminal domain containing protein, expressed -
15 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.002G416150 - -
17 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
18 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
19 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
20 Sobic.009G191700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54


Gene co-expression network
sample Sobic002G429700 Sobic002G429700 Sobic009G155900 Sobic009G155900 Sobic002G429700--Sobic009G155900 Sobic003G368901 Sobic003G368901 Sobic002G429700--Sobic003G368901 Sobic002G127900 Sobic002G127900 Sobic002G429700--Sobic002G127900 Sobic004G031300 Sobic004G031300 Sobic002G429700--Sobic004G031300 Sobic007G187900 Sobic007G187900 Sobic002G429700--Sobic007G187900 Sobic006G088400 Sobic006G088400 Sobic002G429700--Sobic006G088400 Sobic001G039300 Sobic001G039300 Sobic002G429700--Sobic001G039300 Sobic003G002700 Sobic003G002700 Sobic002G429700--Sobic003G002700 Sobic001G542300 Sobic001G542300 Sobic002G429700--Sobic001G542300 Sobic008G165300 Sobic008G165300 Sobic009G155900--Sobic008G165300 Sobic009G155900--Sobic002G127900 Sobic008G165266 Sobic008G165266 Sobic009G155900--Sobic008G165266 Sobic009G155900--Sobic002G429700 Sobic009G224300 Sobic009G224300 Sobic009G155900--Sobic009G224300 Sobic005G138000 Sobic005G138000 Sobic009G155900--Sobic005G138000 Sobic004G248700 Sobic004G248700 Sobic009G155900--Sobic004G248700 Sobic003G434300 Sobic003G434300 Sobic009G155900--Sobic003G434300 Sobic002G266300 Sobic002G266300 Sobic009G155900--Sobic002G266300 Sobic005G045700 Sobic005G045700 Sobic003G368901--Sobic005G045700 Sobic003G368901--Sobic002G127900 Sobic006G262501 Sobic006G262501 Sobic003G368901--Sobic006G262501 Sobic003G368901--Sobic008G165300 Sobic005G139300 Sobic005G139300 Sobic003G368901--Sobic005G139300 Sobic010G264900 Sobic010G264900 Sobic003G368901--Sobic010G264900 Sobic003G368901--Sobic004G031300 Sobic003G368901--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic003G368901--Sobic007G053100 Sobic002G127900--Sobic005G045700 Sobic002G127900--Sobic008G165300 Sobic002G127900--Sobic007G053100 Sobic002G127900--Sobic003G368901 Sobic002G127900--Sobic002G266300 Sobic002G127900--Sobic006G262501 Sobic002G127900--Sobic010G264900 Sobic002G127900--Sobic009G155900 Sobic001G125300 Sobic001G125300 Sobic002G127900--Sobic001G125300 Sobic001G004100 Sobic001G004100 Sobic004G031300--Sobic001G004100 Sobic006G245900 Sobic006G245900 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic003G408300 Sobic003G408300 Sobic007G187900--Sobic003G408300 Sobic001G517200 Sobic001G517200 Sobic007G187900--Sobic001G517200 Sobic009G105900 Sobic009G105900 Sobic007G187900--Sobic009G105900 Sobic003G235000 Sobic003G235000 Sobic007G187900--Sobic003G235000 Sobic002G429400 Sobic002G429400 Sobic007G187900--Sobic002G429400 Sobic003G006400 Sobic003G006400 Sobic007G187900--Sobic003G006400 Sobic007G187900--Sobic002G429700 Sobic001G471000 Sobic001G471000 Sobic007G187900--Sobic001G471000 Sobic003G382500 Sobic003G382500 Sobic007G187900--Sobic003G382500 Sobic006G088400--Sobic003G002700 Sobic002G416150 Sobic002G416150 Sobic006G088400--Sobic002G416150 Sobic006G088400--Sobic002G429700 Sobic009G053101 Sobic009G053101 Sobic006G088400--Sobic009G053101 Sobic003G075400 Sobic003G075400 Sobic006G088400--Sobic003G075400 Sobic007G101100 Sobic007G101100 Sobic006G088400--Sobic007G101100 Sobic010G257000 Sobic010G257000 Sobic006G088400--Sobic010G257000 Sobic010G175000 Sobic010G175000 Sobic006G088400--Sobic010G175000 Sobic005G078700 Sobic005G078700 Sobic006G088400--Sobic005G078700 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic001G039300--Sobic004G031300 Sobic005G120700 Sobic005G120700 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic010G269300 Sobic010G269300 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic009G032200 Sobic009G032200 Sobic001G039300--Sobic009G032200 Sobic006G091000 Sobic006G091000 Sobic003G002700--Sobic006G091000 Sobic003G002700--Sobic006G088400 Sobic003G002700--Sobic010G172400 Sobic001G033900 Sobic001G033900 Sobic003G002700--Sobic001G033900 Sobic005G178950 Sobic005G178950 Sobic003G002700--Sobic005G178950 Sobic004G282500 Sobic004G282500 Sobic003G002700--Sobic004G282500 Sobic007G212800 Sobic007G212800 Sobic003G002700--Sobic007G212800 Sobic003G002700--Sobic005G078700 Sobic010G063566 Sobic010G063566 Sobic003G002700--Sobic010G063566 Sobic002G126300 Sobic002G126300 Sobic001G542300--Sobic002G126300 Sobic004G279500 Sobic004G279500 Sobic001G542300--Sobic004G279500 Sobic002G164300 Sobic002G164300 Sobic001G542300--Sobic002G164300 Sobic002G357700 Sobic002G357700 Sobic001G542300--Sobic002G357700 Sobic009G088000 Sobic009G088000 Sobic001G542300--Sobic009G088000 Sobic010G204400 Sobic010G204400 Sobic001G542300--Sobic010G204400 Sobic010G209400 Sobic010G209400 Sobic001G542300--Sobic010G209400 Sobic007G061700 Sobic007G061700 Sobic001G542300--Sobic007G061700 Sobic002G299100 Sobic002G299100 Sobic001G542300--Sobic002G299100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.