Gene annotation
Transcriptome id Sobic.009G155900.1
Synonym Sb09g021920, DME
Functional annotation hhH-GPD superfamily base excision DNA repair protein, expressed
UniProt A0A1B6P8P8
Pfam PF15628
Panther DB PTHR10359 PTHR10359:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36490 : demeter-like 1
RAP-DB (Rice) LOC_Os05g37350.1 : hhH-GPD superfamily base excision DNA repair protein, expressed
MaizeGDB (Corn) Zm00025a043823
Brachypodium PNT63489 , KQK05991 , KQK05992 , PNT63494 , PNT71154 , PNT71155 , PNT71156 , PNT71153 , PNT63495 , PNT63492 , PNT63493 , PNT63490 , PNT63491
Barley HORVU1Hr1G073540.8 , HORVU1Hr1G073540.9 , HORVU1Hr1G073540.12 , HORVU1Hr1G073540.4 , HORVU1Hr1G073540.5 , HORVU1Hr1G073540.6 , HORVU1Hr1G073540.7 , HORVU1Hr1G073540.1 , HORVU1Hr1G073540.2 , HORVU1Hr1G073540.3 , HORVU1Hr1G073540.11 , HORVU1Hr1G073540.45 , HORVU1Hr1G073540.44 , HORVU1Hr1G073540.46 , HORVU1Hr1G073540.40 , HORVU1Hr1G073540.43 , HORVU1Hr1G073540.49 , HORVU1Hr1G073540.29 , HORVU1Hr1G073540.28 , HORVU1Hr1G073540.27 , HORVU1Hr1G073540.26 , HORVU1Hr1G073540.25 , HORVU1Hr1G073540.24 , HORVU1Hr1G073540.23 , HORVU1Hr1G073540.22 , HORVU1Hr1G073540.21 , HORVU1Hr1G073540.20 , HORVU1Hr1G073540.38 , HORVU1Hr1G073540.39 , HORVU1Hr1G073540.34 , HORVU1Hr1G073540.35 , HORVU1Hr1G073540.36 , HORVU1Hr1G073540.37 , HORVU1Hr1G073540.30 , HORVU1Hr1G073540.31 , HORVU1Hr1G073540.32 , HORVU1Hr1G073540.33 , HORVU1Hr1G073540.16 , HORVU1Hr1G073540.17 , HORVU1Hr1G073540.14 , HORVU1Hr1G073540.15 , HORVU1Hr1G073540.13 , HORVU1Hr1G073540.10 , HORVU1Hr1G073540.18 , HORVU1Hr1G073540.19
Wheat TraesCS5B02G165800 , TraesCS5B02G165800 , TraesCS5D02G173300 , TraesCS5D02G173300 , TraesCS1A02G278000 , TraesCS1A02G278000 , TraesCS1A02G278000 , TraesCS1A02G278000 , TraesCS5A02G169000 , TraesCS1B02G286900 , TraesCS1B02G286900 , TraesCS1B02G364100 , TraesCS1D02G352500 , TraesCS1D02G352500 , TraesCS5B02G165800 , TraesCS1D02G277100 , TraesCS1D02G277100 , TraesCS1D02G277100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165300 Protein kinase domain containing protein, expressed -
2 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.008G165266 - -
4 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase
5 Sobic.009G224300 expressed protein -
6 Sobic.005G138000 zinc knuckle domain containing protein, expressed -
7 Sobic.004G248700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G434300 expressed protein -
9 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
10 Sobic.010G264900 OsFBX79 - F-box domain containing protein, expressed -
11 Sobic.008G018100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
12 Sobic.003G368901 - -
13 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
14 Sobic.002G416150 - -
15 Sobic.010G175000 expressed protein -
16 Sobic.004G116500 expressed protein -
17 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
18 Sobic.004G123200 MYB family transcription factor, putative, expressed -
19 Sobic.004G057700 zinc-binding protein, putative, expressed -
20 Sobic.007G053100 amino acid permease family protein, putative, expressed -


Gene co-expression network
sample Sobic009G155900 Sobic009G155900 Sobic008G165300 Sobic008G165300 Sobic009G155900--Sobic008G165300 Sobic002G127900 Sobic002G127900 Sobic009G155900--Sobic002G127900 Sobic008G165266 Sobic008G165266 Sobic009G155900--Sobic008G165266 Sobic002G429700 Sobic002G429700 Sobic009G155900--Sobic002G429700 Sobic009G224300 Sobic009G224300 Sobic009G155900--Sobic009G224300 Sobic005G138000 Sobic005G138000 Sobic009G155900--Sobic005G138000 Sobic004G248700 Sobic004G248700 Sobic009G155900--Sobic004G248700 Sobic003G434300 Sobic003G434300 Sobic009G155900--Sobic003G434300 Sobic002G266300 Sobic002G266300 Sobic009G155900--Sobic002G266300 Sobic001G125400 Sobic001G125400 Sobic008G165300--Sobic001G125400 Sobic008G018100 Sobic008G018100 Sobic008G165300--Sobic008G018100 Sobic006G083900 Sobic006G083900 Sobic008G165300--Sobic006G083900 Sobic008G165300--Sobic002G127900 Sobic010G179300 Sobic010G179300 Sobic008G165300--Sobic010G179300 Sobic001G393101 Sobic001G393101 Sobic008G165300--Sobic001G393101 Sobic008G165300--Sobic002G266300 Sobic006G217800 Sobic006G217800 Sobic008G165300--Sobic006G217800 Sobic008G165300--Sobic003G434300 Sobic005G045700 Sobic005G045700 Sobic002G127900--Sobic005G045700 Sobic002G127900--Sobic008G165300 Sobic007G053100 Sobic007G053100 Sobic002G127900--Sobic007G053100 Sobic003G368901 Sobic003G368901 Sobic002G127900--Sobic003G368901 Sobic002G127900--Sobic002G266300 Sobic006G262501 Sobic006G262501 Sobic002G127900--Sobic006G262501 Sobic010G264900 Sobic010G264900 Sobic002G127900--Sobic010G264900 Sobic002G127900--Sobic009G155900 Sobic001G125300 Sobic001G125300 Sobic002G127900--Sobic001G125300 Sobic008G165266--Sobic005G138000 Sobic008G165266--Sobic008G165300 Sobic008G165266--Sobic003G434300 Sobic008G165266--Sobic001G125300 Sobic008G165266--Sobic006G083900 Sobic008G165266--Sobic002G127900 Sobic001G534200 Sobic001G534200 Sobic008G165266--Sobic001G534200 Sobic008G165266--Sobic001G125400 Sobic008G165266--Sobic010G179300 Sobic002G429700--Sobic009G155900 Sobic002G429700--Sobic003G368901 Sobic002G429700--Sobic002G127900 Sobic004G031300 Sobic004G031300 Sobic002G429700--Sobic004G031300 Sobic007G187900 Sobic007G187900 Sobic002G429700--Sobic007G187900 Sobic006G088400 Sobic006G088400 Sobic002G429700--Sobic006G088400 Sobic001G039300 Sobic001G039300 Sobic002G429700--Sobic001G039300 Sobic003G002700 Sobic003G002700 Sobic002G429700--Sobic003G002700 Sobic001G542300 Sobic001G542300 Sobic002G429700--Sobic001G542300 Sobic003G147500 Sobic003G147500 Sobic009G224300--Sobic003G147500 Sobic006G016700 Sobic006G016700 Sobic009G224300--Sobic006G016700 Sobic004G286200 Sobic004G286200 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic007G219100 Sobic007G219100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic003G350400 Sobic003G350400 Sobic009G224300--Sobic003G350400 Sobic007G082000 Sobic007G082000 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic008G123200 Sobic008G123200 Sobic005G138000--Sobic008G123200 Sobic005G138000--Sobic003G434300 Sobic004G142400 Sobic004G142400 Sobic005G138000--Sobic004G142400 Sobic005G126701 Sobic005G126701 Sobic005G138000--Sobic005G126701 Sobic005G138000--Sobic006G083900 Sobic005G138000--Sobic008G018100 Sobic009G053300 Sobic009G053300 Sobic005G138000--Sobic009G053300 Sobic005G138000--Sobic008G165266 Sobic005G138000--Sobic003G350400 Sobic004G116500 Sobic004G116500 Sobic004G248700--Sobic004G116500 Sobic004G248700--Sobic009G155900 Sobic004G248700--Sobic003G434300 Sobic004G057700 Sobic004G057700 Sobic004G248700--Sobic004G057700 Sobic004G248700--Sobic005G138000 Sobic004G244200 Sobic004G244200 Sobic004G248700--Sobic004G244200 Sobic007G143800 Sobic007G143800 Sobic004G248700--Sobic007G143800 Sobic005G120600 Sobic005G120600 Sobic004G248700--Sobic005G120600 Sobic009G000600 Sobic009G000600 Sobic004G248700--Sobic009G000600 Sobic006G234433 Sobic006G234433 Sobic003G434300--Sobic006G234433 Sobic003G434300--Sobic006G083900 Sobic001G122600 Sobic001G122600 Sobic003G434300--Sobic001G122600 Sobic002G266300--Sobic006G217800 Sobic005G021000 Sobic005G021000 Sobic002G266300--Sobic005G021000 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic002G266300--Sobic001G125400 Sobic009G025500 Sobic009G025500 Sobic002G266300--Sobic009G025500 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic006G208000 Sobic006G208000 Sobic002G266300--Sobic006G208000
Octagon: transcription factors


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