Gene annotation
Transcriptome id Sobic.003G002700.1
Synonym Sb03g000410
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XJI5
Pfam PF00400 PF04158
Panther DB PTHR22851 PTHR22851:SF0
NCBI CDD -
KEGG Orthology K11806; DCAF13, DDB1- and CUL4-associated factor 13
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G28450 : nucleotide binding;protein binding
RAP-DB (Rice) LOC_Os01g13730.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009088
Brachypodium KQK03502 , KQJ84559
Barley HORVU3Hr1G032420.12 , HORVU3Hr1G032420.14 , HORVU3Hr1G032420.17 , HORVU3Hr1G032420.7 , HORVU3Hr1G032420.8 , HORVU3Hr1G032420.9 , HORVU3Hr1G032420.10 , HORVU3Hr1G032420.13 , HORVU3Hr1G032420.15 , HORVU3Hr1G032420.16 , HORVU3Hr1G032420.11
Wheat TraesCS3B02G191500 , TraesCS3A02G160900 , TraesCS3D02G168100
Populus PNT28766 , PNS94748


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cDNA sequences
Sobic.003G002700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
2 Sobic.006G088400 OsFBX135 - F-box domain containing protein, expressed -
3 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
4 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.005G178950 - -
6 Sobic.004G282500 PPR repeat domain containing protein, putative, expressed -
7 Sobic.007G212800 frataxin, putative, expressed K19054: frataxin
8 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
9 Sobic.010G063566 - K11111: TERF2, telomeric repeat-binding factor 2
10 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
11 Sobic.003G025600 POLD3 - Putative DNA polymerase delta complex subunit, expressed K03504: DNA polymerase delta subunit 3
12 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase
13 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
14 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
15 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
17 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
18 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
19 Sobic.007G112000 - -
20 Sobic.001G326600 OsFBX164 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G002700 Sobic003G002700 Sobic006G091000 Sobic006G091000 Sobic003G002700--Sobic006G091000 Sobic006G088400 Sobic006G088400 Sobic003G002700--Sobic006G088400 Sobic010G172400 Sobic010G172400 Sobic003G002700--Sobic010G172400 Sobic001G033900 Sobic001G033900 Sobic003G002700--Sobic001G033900 Sobic005G178950 Sobic005G178950 Sobic003G002700--Sobic005G178950 Sobic004G282500 Sobic004G282500 Sobic003G002700--Sobic004G282500 Sobic007G212800 Sobic007G212800 Sobic003G002700--Sobic007G212800 Sobic005G078700 Sobic005G078700 Sobic003G002700--Sobic005G078700 Sobic010G063566 Sobic010G063566 Sobic003G002700--Sobic010G063566 Sobic009G040800 Sobic009G040800 Sobic006G091000--Sobic009G040800 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic006G088400--Sobic003G002700 Sobic002G416150 Sobic002G416150 Sobic006G088400--Sobic002G416150 Sobic002G429700 Sobic002G429700 Sobic006G088400--Sobic002G429700 Sobic009G053101 Sobic009G053101 Sobic006G088400--Sobic009G053101 Sobic003G075400 Sobic003G075400 Sobic006G088400--Sobic003G075400 Sobic007G101100 Sobic007G101100 Sobic006G088400--Sobic007G101100 Sobic010G257000 Sobic010G257000 Sobic006G088400--Sobic010G257000 Sobic010G175000 Sobic010G175000 Sobic006G088400--Sobic010G175000 Sobic006G088400--Sobic005G078700 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic003G222700 Sobic003G222700 Sobic010G172400--Sobic003G222700 Sobic002G399900 Sobic002G399900 Sobic010G172400--Sobic002G399900 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic007G017200 Sobic007G017200 Sobic001G033900--Sobic007G017200 Sobic003G259600 Sobic003G259600 Sobic001G033900--Sobic003G259600 Sobic001G013300 Sobic001G013300 Sobic001G033900--Sobic001G013300 Sobic003G361400 Sobic003G361400 Sobic001G033900--Sobic003G361400 Sobic010G136250 Sobic010G136250 Sobic001G033900--Sobic010G136250 Sobic006G140400 Sobic006G140400 Sobic001G033900--Sobic006G140400 Sobic003G360300 Sobic003G360300 Sobic001G033900--Sobic003G360300 Sobic005G108000 Sobic005G108000 Sobic001G033900--Sobic005G108000 Sobic001G334100 Sobic001G334100 Sobic001G033900--Sobic001G334100 Sobic005G178950--Sobic006G091000 Sobic001G042200 Sobic001G042200 Sobic005G178950--Sobic001G042200 Sobic005G178950--Sobic009G040800 Sobic007G187600 Sobic007G187600 Sobic005G178950--Sobic007G187600 Sobic002G299100 Sobic002G299100 Sobic005G178950--Sobic002G299100 Sobic007G056500 Sobic007G056500 Sobic005G178950--Sobic007G056500 Sobic010G077500 Sobic010G077500 Sobic005G178950--Sobic010G077500 Sobic005G178950--Sobic010G074900 Sobic009G151200 Sobic009G151200 Sobic005G178950--Sobic009G151200 Sobic001G268300 Sobic001G268300 Sobic004G282500--Sobic001G268300 Sobic006G262800 Sobic006G262800 Sobic004G282500--Sobic006G262800 Sobic003G325900 Sobic003G325900 Sobic004G282500--Sobic003G325900 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic009G154900 Sobic009G154900 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic008G031200 Sobic008G031200 Sobic004G282500--Sobic008G031200 Sobic003G412000 Sobic003G412000 Sobic004G282500--Sobic003G412000 Sobic007G212800--Sobic006G091000 Sobic007G212800--Sobic009G040800 Sobic002G398500 Sobic002G398500 Sobic007G212800--Sobic002G398500 Sobic007G212800--Sobic005G178950 Sobic007G212800--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic007G212800--Sobic002G131400 Sobic007G212800--Sobic007G139400 Sobic007G115900 Sobic007G115900 Sobic007G212800--Sobic007G115900 Sobic001G061200 Sobic001G061200 Sobic007G212800--Sobic001G061200 Sobic005G078700--Sobic003G325900 Sobic010G143600 Sobic010G143600 Sobic005G078700--Sobic010G143600 Sobic003G184666 Sobic003G184666 Sobic005G078700--Sobic003G184666 Sobic005G078700--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic005G078700--Sobic002G362200 Sobic005G078700--Sobic006G262800 Sobic005G078700--Sobic004G282500 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400 Sobic002G177500 Sobic002G177500 Sobic010G063566--Sobic002G177500 Sobic002G256800 Sobic002G256800 Sobic010G063566--Sobic002G256800 Sobic001G268700 Sobic001G268700 Sobic010G063566--Sobic001G268700 Sobic006G111200 Sobic006G111200 Sobic010G063566--Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic010G063566--Sobic001G453500 Sobic002G339800 Sobic002G339800 Sobic010G063566--Sobic002G339800 Sobic001G168100 Sobic001G168100 Sobic010G063566--Sobic001G168100 Sobic002G223300 Sobic002G223300 Sobic010G063566--Sobic002G223300 Sobic003G223500 Sobic003G223500 Sobic010G063566--Sobic003G223500
Octagon: transcription factors


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