Gene annotation
Transcriptome id Sobic.007G212800.1
Synonym FH, ATFH, Sb07g028000
Functional annotation frataxin, putative, expressed
UniProt A0A1Z5RB02
Pfam PF01491
Panther DB PTHR16821
NCBI CDD KOG3413; Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis
KEGG Orthology K19054; frataxin
Gene Ontology GO:0016226; iron-sulfur cluster assembly GO:0008199ferric iron binding


Orthologs (automatic annotation)
TAIR AT4G03240 : frataxin homolog
RAP-DB (Rice) LOC_Os01g57460.1 : frataxin, putative, expressed
MaizeGDB (Corn) Zm00025a027263 , Zm00025a005048
Brachypodium -
Barley -
Wheat TraesCS3A02G315500 , TraesCS3D02G316000
Populus -


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cDNA sequences
Sobic.007G212800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
2 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
3 Sobic.002G398500 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
4 Sobic.005G178950 - -
5 Sobic.002G299100 SET domain containing protein, expressed -
6 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
7 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.007G115900 SAM domain family protein, expressed -
9 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
10 Sobic.006G103700 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
11 Sobic.001G335000 erlin-2 precursor, putative, expressed -
12 Sobic.003G214300 expressed protein -
13 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
14 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
15 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
16 Sobic.003G211700 expressed protein -
17 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
19 Sobic.010G217200 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
20 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -


Gene co-expression network
sample Sobic007G212800 Sobic007G212800 Sobic006G091000 Sobic006G091000 Sobic007G212800--Sobic006G091000 Sobic009G040800 Sobic009G040800 Sobic007G212800--Sobic009G040800 Sobic002G398500 Sobic002G398500 Sobic007G212800--Sobic002G398500 Sobic005G178950 Sobic005G178950 Sobic007G212800--Sobic005G178950 Sobic002G299100 Sobic002G299100 Sobic007G212800--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic007G212800--Sobic002G131400 Sobic007G139400 Sobic007G139400 Sobic007G212800--Sobic007G139400 Sobic007G115900 Sobic007G115900 Sobic007G212800--Sobic007G115900 Sobic001G061200 Sobic001G061200 Sobic007G212800--Sobic001G061200 Sobic006G091000--Sobic009G040800 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic009G040800--Sobic004G353400 Sobic001G043200 Sobic001G043200 Sobic002G398500--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic002G398500--Sobic009G199500 Sobic001G474400 Sobic001G474400 Sobic002G398500--Sobic001G474400 Sobic001G343000 Sobic001G343000 Sobic002G398500--Sobic001G343000 Sobic002G398500--Sobic002G131400 Sobic003G113300 Sobic003G113300 Sobic002G398500--Sobic003G113300 Sobic002G398500--Sobic010G172400 Sobic003G445200 Sobic003G445200 Sobic002G398500--Sobic003G445200 Sobic006G103700 Sobic006G103700 Sobic002G398500--Sobic006G103700 Sobic005G178950--Sobic006G091000 Sobic005G178950--Sobic001G042200 Sobic005G178950--Sobic009G040800 Sobic007G187600 Sobic007G187600 Sobic005G178950--Sobic007G187600 Sobic005G178950--Sobic002G299100 Sobic007G056500 Sobic007G056500 Sobic005G178950--Sobic007G056500 Sobic010G077500 Sobic010G077500 Sobic005G178950--Sobic010G077500 Sobic005G178950--Sobic010G074900 Sobic009G151200 Sobic009G151200 Sobic005G178950--Sobic009G151200 Sobic009G137100 Sobic009G137100 Sobic002G299100--Sobic009G137100 Sobic002G197100 Sobic002G197100 Sobic002G299100--Sobic002G197100 Sobic002G370900 Sobic002G370900 Sobic002G299100--Sobic002G370900 Sobic002G299100--Sobic004G246100 Sobic001G176200 Sobic001G176200 Sobic002G299100--Sobic001G176200 Sobic002G299100--Sobic009G040800 Sobic006G082900 Sobic006G082900 Sobic002G299100--Sobic006G082900 Sobic005G154500 Sobic005G154500 Sobic002G299100--Sobic005G154500 Sobic002G299100--Sobic009G199500 Sobic004G122900 Sobic004G122900 Sobic002G131400--Sobic004G122900 Sobic001G467100 Sobic001G467100 Sobic002G131400--Sobic001G467100 Sobic002G131400--Sobic009G199500 Sobic001G211900 Sobic001G211900 Sobic002G131400--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic002G131400--Sobic001G099900 Sobic002G364900 Sobic002G364900 Sobic002G131400--Sobic002G364900 Sobic001G405600 Sobic001G405600 Sobic002G131400--Sobic001G405600 Sobic007G105900 Sobic007G105900 Sobic002G131400--Sobic007G105900 Sobic003G181700 Sobic003G181700 Sobic002G131400--Sobic003G181700 Sobic007G139400--Sobic004G347100 Sobic002G033600 Sobic002G033600 Sobic007G139400--Sobic002G033600 Sobic007G188900 Sobic007G188900 Sobic007G139400--Sobic007G188900 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic007G139400--Sobic005G040900 Sobic002G334600 Sobic002G334600 Sobic007G139400--Sobic002G334600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic001G522900 Sobic001G522900 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic006G258900 Sobic006G258900 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700 Sobic001G193100 Sobic001G193100 Sobic001G061200--Sobic001G193100 Sobic007G173700 Sobic007G173700 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic002G276800 Sobic002G276800 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100
Octagon: transcription factors


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