Gene annotation
Transcriptome id Sobic.006G103700.3,Sobic.006G103700.1,Sobic.006G103700.2,Sobic.006G103700.4,Sobic.006G103700.5
Synonym
Functional annotation tRNA synthetase, putative, expressed
UniProt A0A1Z5RD63 , A0A1Z5RD54 , A0A1B6PLA1
Pfam PF00579
Panther DB PTHR11946 PTHR11946:SF85
NCBI CDD KOG2144; Tyrosyl-tRNA synthetase, cytoplasmic
KEGG Orthology K01866; YARS, tyrosyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT2G33840 : Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
RAP-DB (Rice) LOC_Os08g05490.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK08245 , PNT73521 , PNT73520 , KQK11367
Barley -
Wheat TraesCS5A02G270800
Populus -


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cDNA sequences
Sobic.006G103700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G220400 exonuclease, putative, expressed -
2 Sobic.003G113300 expressed protein -
3 Sobic.006G170900 growth regulator related protein, putative, expressed -
4 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
5 Sobic.004G060300 DNA binding protein, putative, expressed -
6 Sobic.001G043200 expressed protein -
7 Sobic.001G335000 erlin-2 precursor, putative, expressed -
8 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
9 Sobic.001G521700 - -
10 Sobic.009G122500 expressed protein -
11 Sobic.002G398500 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
12 Sobic.004G194100 expressed protein -
13 Sobic.003G445200 - -
14 Sobic.006G012300 3-5 exonuclease domain-containing protein, putative, expressed -
15 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
16 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
17 Sobic.002G014800 expressed protein -
18 Sobic.005G123400 expressed protein -
19 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
20 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1


Gene co-expression network
sample Sobic006G103700 Sobic006G103700 Sobic006G220400 Sobic006G220400 Sobic006G103700--Sobic006G220400 Sobic003G113300 Sobic003G113300 Sobic006G103700--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic006G103700--Sobic006G170900 Sobic004G122900 Sobic004G122900 Sobic006G103700--Sobic004G122900 Sobic004G060300 Sobic004G060300 Sobic006G103700--Sobic004G060300 Sobic001G043200 Sobic001G043200 Sobic006G103700--Sobic001G043200 Sobic001G335000 Sobic001G335000 Sobic006G103700--Sobic001G335000 Sobic007G030100 Sobic007G030100 Sobic006G103700--Sobic007G030100 Sobic001G521700 Sobic001G521700 Sobic006G103700--Sobic001G521700 Sobic006G220400--Sobic001G043200 Sobic005G123400 Sobic005G123400 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic005G114500 Sobic005G114500 Sobic003G113300--Sobic005G114500 Sobic003G113300--Sobic007G030100 Sobic003G393200 Sobic003G393200 Sobic003G113300--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G113300--Sobic001G051400 Sobic006G170900--Sobic005G123400 Sobic003G124600 Sobic003G124600 Sobic006G170900--Sobic003G124600 Sobic006G170900--Sobic003G113300 Sobic007G034200 Sobic007G034200 Sobic006G170900--Sobic007G034200 Sobic006G170900--Sobic006G103700 Sobic002G292800 Sobic002G292800 Sobic006G170900--Sobic002G292800 Sobic003G194800 Sobic003G194800 Sobic006G170900--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic006G170900--Sobic004G106250 Sobic006G237500 Sobic006G237500 Sobic006G170900--Sobic006G237500 Sobic003G181700 Sobic003G181700 Sobic004G122900--Sobic003G181700 Sobic004G122900--Sobic009G122500 Sobic009G194000 Sobic009G194000 Sobic004G122900--Sobic009G194000 Sobic001G156900 Sobic001G156900 Sobic004G122900--Sobic001G156900 Sobic004G122900--Sobic001G043200 Sobic004G122900--Sobic001G335000 Sobic001G308400 Sobic001G308400 Sobic004G122900--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic004G122900--Sobic003G021600 Sobic002G227500 Sobic002G227500 Sobic004G122900--Sobic002G227500 Sobic007G118500 Sobic007G118500 Sobic004G060300--Sobic007G118500 Sobic004G060300--Sobic009G122500 Sobic003G394500 Sobic003G394500 Sobic004G060300--Sobic003G394500 Sobic004G060300--Sobic001G335000 Sobic003G346400 Sobic003G346400 Sobic004G060300--Sobic003G346400 Sobic004G060300--Sobic007G030100 Sobic001G389200 Sobic001G389200 Sobic004G060300--Sobic001G389200 Sobic004G084500 Sobic004G084500 Sobic004G060300--Sobic004G084500 Sobic001G012900 Sobic001G012900 Sobic004G060300--Sobic001G012900 Sobic001G043200--Sobic005G123400 Sobic003G190200 Sobic003G190200 Sobic001G043200--Sobic003G190200 Sobic001G043200--Sobic003G021600 Sobic001G043200--Sobic003G394500 Sobic001G043200--Sobic009G122500 Sobic001G043200--Sobic007G030100 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic001G043200--Sobic003G194800 Sobic001G335000--Sobic009G122500 Sobic001G335000--Sobic004G060300 Sobic001G335000--Sobic001G156900 Sobic001G335000--Sobic004G122900 Sobic001G335000--Sobic001G012900 Sobic001G335000--Sobic001G043200 Sobic001G193100 Sobic001G193100 Sobic001G335000--Sobic001G193100 Sobic001G335000--Sobic003G181700 Sobic001G335000--Sobic007G118500 Sobic007G030100--Sobic003G190200 Sobic002G147200 Sobic002G147200 Sobic007G030100--Sobic002G147200 Sobic007G030100--Sobic003G394500 Sobic003G117800 Sobic003G117800 Sobic007G030100--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic007G030100--Sobic001G385000 Sobic007G172700 Sobic007G172700 Sobic007G030100--Sobic007G172700 Sobic001G424800 Sobic001G424800 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic003G428000 Sobic003G428000 Sobic007G030100--Sobic003G428000 Sobic001G521700--Sobic007G030100 Sobic001G521700--Sobic002G147200 Sobic002G147100 Sobic002G147100 Sobic001G521700--Sobic002G147100 Sobic004G259300 Sobic004G259300 Sobic001G521700--Sobic004G259300 Sobic001G521700--Sobic006G103700 Sobic009G102000 Sobic009G102000 Sobic001G521700--Sobic009G102000 Sobic001G521700--Sobic006G170900 Sobic002G203600 Sobic002G203600 Sobic001G521700--Sobic002G203600 Sobic001G521700--Sobic005G123400
Octagon: transcription factors


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