Gene annotation
Transcriptome id Sobic.003G211700.1
Synonym Sb03g027140
Functional annotation expressed protein
UniProt C5XQA4
Pfam PF12937
Panther DB PTHR31264 PTHR31264:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g41950.1 : expressed protein
MaizeGDB (Corn) Zm00025a028633
Brachypodium -
Barley HORVU3Hr1G035080.1 , HORVU3Hr1G035080.2
Wheat TraesCS3A02G173100 , TraesCS3D02G179400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115900 SAM domain family protein, expressed -
2 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
4 Sobic.007G158900 expressed protein -
5 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
6 Sobic.007G212800 frataxin, putative, expressed K19054: frataxin
7 Sobic.005G178950 - -
8 Sobic.010G048900 - -
9 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
10 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
11 Sobic.003G167000 protein phosphotase protein, putative, expressed -
12 Sobic.010G074900 G protein coupled receptor, putative, expressed -
13 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
14 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
15 Sobic.004G241600 MAGE-8 antigen-related, putative, expressed -
16 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
17 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
18 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
19 Sobic.003G079750 - -
20 Sobic.010G209700 expressed protein -


Gene co-expression network
sample Sobic003G211700 Sobic003G211700 Sobic007G115900 Sobic007G115900 Sobic003G211700--Sobic007G115900 Sobic004G316800 Sobic004G316800 Sobic003G211700--Sobic004G316800 Sobic007G053400 Sobic007G053400 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic005G178950 Sobic005G178950 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300 Sobic007G115900--Sobic004G316800 Sobic001G522900 Sobic001G522900 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic006G258900 Sobic006G258900 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic007G115900--Sobic003G211700 Sobic004G316800--Sobic007G115900 Sobic004G316800--Sobic003G211700 Sobic004G316800--Sobic001G522900 Sobic004G316800--Sobic006G092800 Sobic004G316800--Sobic006G258900 Sobic004G316800--Sobic002G378200 Sobic003G374000 Sobic003G374000 Sobic004G316800--Sobic003G374000 Sobic010G074900 Sobic010G074900 Sobic004G316800--Sobic010G074900 Sobic004G316800--Sobic004G007300 Sobic006G091000 Sobic006G091000 Sobic007G053400--Sobic006G091000 Sobic001G343000 Sobic001G343000 Sobic007G053400--Sobic001G343000 Sobic007G053400--Sobic003G211700 Sobic004G353400 Sobic004G353400 Sobic007G053400--Sobic004G353400 Sobic007G053400--Sobic010G074900 Sobic010G172400 Sobic010G172400 Sobic007G053400--Sobic010G172400 Sobic007G139400 Sobic007G139400 Sobic007G053400--Sobic007G139400 Sobic007G201000 Sobic007G201000 Sobic007G053400--Sobic007G201000 Sobic009G040800 Sobic009G040800 Sobic007G053400--Sobic009G040800 Sobic009G199500 Sobic009G199500 Sobic007G158900--Sobic009G199500 Sobic010G181600 Sobic010G181600 Sobic007G158900--Sobic010G181600 Sobic007G192400 Sobic007G192400 Sobic007G158900--Sobic007G192400 Sobic009G059400 Sobic009G059400 Sobic007G158900--Sobic009G059400 Sobic002G023100 Sobic002G023100 Sobic007G158900--Sobic002G023100 Sobic001G017200 Sobic001G017200 Sobic007G158900--Sobic001G017200 Sobic007G218600 Sobic007G218600 Sobic007G158900--Sobic007G218600 Sobic004G218300 Sobic004G218300 Sobic007G158900--Sobic004G218300 Sobic008G006000 Sobic008G006000 Sobic007G158900--Sobic008G006000 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic009G041800 Sobic009G041800 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic007G212800--Sobic006G091000 Sobic007G212800--Sobic009G040800 Sobic002G398500 Sobic002G398500 Sobic007G212800--Sobic002G398500 Sobic007G212800--Sobic005G178950 Sobic002G299100 Sobic002G299100 Sobic007G212800--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic007G212800--Sobic002G131400 Sobic007G212800--Sobic007G139400 Sobic007G212800--Sobic007G115900 Sobic001G061200 Sobic001G061200 Sobic007G212800--Sobic001G061200 Sobic005G178950--Sobic006G091000 Sobic001G042200 Sobic001G042200 Sobic005G178950--Sobic001G042200 Sobic005G178950--Sobic009G040800 Sobic007G187600 Sobic007G187600 Sobic005G178950--Sobic007G187600 Sobic005G178950--Sobic002G299100 Sobic007G056500 Sobic007G056500 Sobic005G178950--Sobic007G056500 Sobic010G077500 Sobic010G077500 Sobic005G178950--Sobic010G077500 Sobic005G178950--Sobic010G074900 Sobic009G151200 Sobic009G151200 Sobic005G178950--Sobic009G151200 Sobic010G048900--Sobic003G211700 Sobic003G445200 Sobic003G445200 Sobic010G048900--Sobic003G445200 Sobic006G153200 Sobic006G153200 Sobic010G048900--Sobic006G153200 Sobic001G013200 Sobic001G013200 Sobic010G048900--Sobic001G013200 Sobic003G330200 Sobic003G330200 Sobic010G048900--Sobic003G330200 Sobic007G070300 Sobic007G070300 Sobic010G048900--Sobic007G070300 Sobic010G048900--Sobic003G167000 Sobic010G048900--Sobic003G113400 Sobic001G335201 Sobic001G335201 Sobic010G048900--Sobic001G335201 Sobic004G164000 Sobic004G164000 Sobic003G131300--Sobic004G164000 Sobic010G197900 Sobic010G197900 Sobic003G131300--Sobic010G197900 Sobic006G094600 Sobic006G094600 Sobic003G131300--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic003G131300--Sobic001G126200 Sobic001G035400 Sobic001G035400 Sobic003G131300--Sobic001G035400 Sobic004G344800 Sobic004G344800 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic009G001900 Sobic009G001900 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501
Octagon: transcription factors


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