Gene annotation
Transcriptome id Sobic.004G282500.1,Sobic.004G282500.3,Sobic.004G282500.2
Synonym OTP43, Sb04g031880
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A194YS43
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF917
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74900 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g45590.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021510
Brachypodium KQK00768 , KQK00769 , PNT69235
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
2 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
4 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
5 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
6 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
7 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
8 Sobic.008G031200 pentatricopeptide, putative, expressed -
9 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
10 Sobic.003G204100 expressed protein -
11 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
12 Sobic.001G204700 expressed protein -
13 Sobic.006G069100 pentatricopeptide, putative, expressed -
14 Sobic.005G075800 rp3 protein, putative, expressed -
15 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
16 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
17 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
18 Sobic.004G043600 expressed protein -
19 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
20 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -


Gene co-expression network
sample Sobic004G282500 Sobic004G282500 Sobic001G268300 Sobic001G268300 Sobic004G282500--Sobic001G268300 Sobic006G262800 Sobic006G262800 Sobic004G282500--Sobic006G262800 Sobic003G325900 Sobic003G325900 Sobic004G282500--Sobic003G325900 Sobic005G078700 Sobic005G078700 Sobic004G282500--Sobic005G078700 Sobic001G122200 Sobic001G122200 Sobic004G282500--Sobic001G122200 Sobic009G154900 Sobic009G154900 Sobic004G282500--Sobic009G154900 Sobic001G203600 Sobic001G203600 Sobic004G282500--Sobic001G203600 Sobic008G031200 Sobic008G031200 Sobic004G282500--Sobic008G031200 Sobic003G412000 Sobic003G412000 Sobic004G282500--Sobic003G412000 Sobic009G041800 Sobic009G041800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic001G268300--Sobic004G282500 Sobic001G268300--Sobic005G078700 Sobic010G068900 Sobic010G068900 Sobic006G262800--Sobic010G068900 Sobic006G262800--Sobic009G154900 Sobic001G478900 Sobic001G478900 Sobic006G262800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G262800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic003G325900--Sobic005G078700 Sobic003G325900--Sobic004G282500 Sobic003G184666 Sobic003G184666 Sobic003G325900--Sobic003G184666 Sobic003G325900--Sobic001G268300 Sobic003G325900--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic003G325900--Sobic003G045450 Sobic008G123200 Sobic008G123200 Sobic003G325900--Sobic008G123200 Sobic006G088820 Sobic006G088820 Sobic003G325900--Sobic006G088820 Sobic003G325900--Sobic003G412000 Sobic005G078700--Sobic003G325900 Sobic010G143600 Sobic010G143600 Sobic005G078700--Sobic010G143600 Sobic005G078700--Sobic003G184666 Sobic005G078700--Sobic001G268300 Sobic005G078700--Sobic002G362200 Sobic005G078700--Sobic006G262800 Sobic005G078700--Sobic004G282500 Sobic005G078700--Sobic009G154900 Sobic009G105400 Sobic009G105400 Sobic005G078700--Sobic009G105400 Sobic001G122200--Sobic008G163400 Sobic001G122200--Sobic010G068900 Sobic001G122200--Sobic004G282500 Sobic001G122200--Sobic004G241000 Sobic001G122200--Sobic006G262800 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic006G069100 Sobic006G069100 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic004G007900 Sobic004G007900 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic001G448100 Sobic001G448100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic010G252700 Sobic010G252700 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic001G537400 Sobic001G537400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic001G024000 Sobic001G024000 Sobic003G412000--Sobic001G024000 Sobic003G322200 Sobic003G322200 Sobic003G412000--Sobic003G322200 Sobic005G098000 Sobic005G098000 Sobic003G412000--Sobic005G098000 Sobic008G068100 Sobic008G068100 Sobic003G412000--Sobic008G068100 Sobic008G111600 Sobic008G111600 Sobic003G412000--Sobic008G111600 Sobic002G112600 Sobic002G112600 Sobic003G412000--Sobic002G112600 Sobic010G038800 Sobic010G038800 Sobic003G412000--Sobic010G038800 Sobic001G483800 Sobic001G483800 Sobic003G412000--Sobic001G483800 Sobic003G412000--Sobic009G154900
Octagon: transcription factors


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