Gene annotation
Transcriptome id Sobic.002G316800.1
Synonym Sb02g034580
Functional annotation 3\'-5\' exonuclease, putative, expressed
UniProt A0A1B6QEJ2
Pfam PF00570 PF01612
Panther DB PTHR12124 PTHR12124:SF41
NCBI CDD -
KEGG Orthology K12951; cobalt/nickel-transporting P-type ATPase D
Gene Ontology GO:0005622; intracellular GO:0003676nucleic acid binding GO:00084083'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process


Orthologs (automatic annotation)
TAIR AT2G32415 : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
RAP-DB (Rice) LOC_Os07g32890.1 : 3\'-5\' exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a048211
Brachypodium KQK16023
Barley HORVU2Hr1G046740.33 , HORVU2Hr1G046740.32 , HORVU2Hr1G046740.31 , HORVU2Hr1G046740.30 , HORVU2Hr1G046740.36 , HORVU2Hr1G046740.35 , HORVU2Hr1G046740.34 , HORVU2Hr1G046740.20 , HORVU2Hr1G046740.22 , HORVU2Hr1G046740.23 , HORVU2Hr1G046740.24 , HORVU2Hr1G046740.25 , HORVU2Hr1G046740.26 , HORVU2Hr1G046740.27 , HORVU2Hr1G046740.28 , HORVU2Hr1G046740.29 , HORVU2Hr1G046740.15 , HORVU2Hr1G046740.17 , HORVU2Hr1G046740.16 , HORVU2Hr1G046740.11 , HORVU2Hr1G046740.10 , HORVU2Hr1G046740.12 , HORVU2Hr1G046740.19 , HORVU2Hr1G046740.18 , HORVU2Hr1G046740.1 , HORVU2Hr1G046740.3 , HORVU2Hr1G046740.2 , HORVU2Hr1G046740.5 , HORVU2Hr1G046740.4 , HORVU2Hr1G046740.7 , HORVU2Hr1G046740.6 , HORVU2Hr1G046740.9 , HORVU2Hr1G046740.8
Wheat TraesCS2D02G229500 , TraesCS2D02G229500 , TraesCS2A02G223500 , TraesCS2A02G223500 , TraesCS2B02G273800 , TraesCS2B02G273800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G224300 expressed protein -
2 Sobic.004G278900 regulatory protein, putative, expressed -
3 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
4 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase
5 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
6 Sobic.003G184666 - -
7 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
8 Sobic.002G416150 - -
9 Sobic.003G183466 - -
10 Sobic.009G014000 expressed protein -
11 Sobic.004G116500 expressed protein -
12 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
13 Sobic.009G069200 glycine-rich protein, putative, expressed -
14 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
15 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
16 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
18 Sobic.009G155900 hhH-GPD superfamily base excision DNA repair protein, expressed -
19 Sobic.001G429200 AT hook motif family protein, expressed -
20 Sobic.003G368901 - -


Gene co-expression network
sample Sobic002G316800 Sobic002G316800 Sobic009G224300 Sobic009G224300 Sobic002G316800--Sobic009G224300 Sobic004G278900 Sobic004G278900 Sobic002G316800--Sobic004G278900 Sobic003G397100 Sobic003G397100 Sobic002G316800--Sobic003G397100 Sobic002G429700 Sobic002G429700 Sobic002G316800--Sobic002G429700 Sobic010G172400 Sobic010G172400 Sobic002G316800--Sobic010G172400 Sobic003G184666 Sobic003G184666 Sobic002G316800--Sobic003G184666 Sobic002G066800 Sobic002G066800 Sobic002G316800--Sobic002G066800 Sobic002G416150 Sobic002G416150 Sobic002G316800--Sobic002G416150 Sobic003G183466 Sobic003G183466 Sobic002G316800--Sobic003G183466 Sobic003G147500 Sobic003G147500 Sobic009G224300--Sobic003G147500 Sobic006G016700 Sobic006G016700 Sobic009G224300--Sobic006G016700 Sobic004G286200 Sobic004G286200 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic007G219100 Sobic007G219100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic003G350400 Sobic003G350400 Sobic009G224300--Sobic003G350400 Sobic007G082000 Sobic007G082000 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic004G278900--Sobic003G183466 Sobic010G143600 Sobic010G143600 Sobic004G278900--Sobic010G143600 Sobic010G235700 Sobic010G235700 Sobic004G278900--Sobic010G235700 Sobic004G278900--Sobic003G397100 Sobic003G299500 Sobic003G299500 Sobic004G278900--Sobic003G299500 Sobic001G123600 Sobic001G123600 Sobic004G278900--Sobic001G123600 Sobic006G184200 Sobic006G184200 Sobic004G278900--Sobic006G184200 Sobic006G191200 Sobic006G191200 Sobic004G278900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic004G278900--Sobic007G034200 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic002G123600 Sobic002G123600 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic008G169400 Sobic008G169400 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200 Sobic009G155900 Sobic009G155900 Sobic002G429700--Sobic009G155900 Sobic003G368901 Sobic003G368901 Sobic002G429700--Sobic003G368901 Sobic002G127900 Sobic002G127900 Sobic002G429700--Sobic002G127900 Sobic004G031300 Sobic004G031300 Sobic002G429700--Sobic004G031300 Sobic007G187900 Sobic007G187900 Sobic002G429700--Sobic007G187900 Sobic006G088400 Sobic006G088400 Sobic002G429700--Sobic006G088400 Sobic001G039300 Sobic001G039300 Sobic002G429700--Sobic001G039300 Sobic003G002700 Sobic003G002700 Sobic002G429700--Sobic003G002700 Sobic001G542300 Sobic001G542300 Sobic002G429700--Sobic001G542300 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic003G222700 Sobic003G222700 Sobic010G172400--Sobic003G222700 Sobic002G399900 Sobic002G399900 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic010G252200 Sobic010G252200 Sobic003G184666--Sobic010G252200 Sobic005G078700 Sobic005G078700 Sobic003G184666--Sobic005G078700 Sobic003G184666--Sobic010G143600 Sobic003G184666--Sobic003G183466 Sobic006G126800 Sobic006G126800 Sobic003G184666--Sobic006G126800 Sobic003G325900 Sobic003G325900 Sobic003G184666--Sobic003G325900 Sobic003G045450 Sobic003G045450 Sobic003G184666--Sobic003G045450 Sobic002G362200 Sobic002G362200 Sobic003G184666--Sobic002G362200 Sobic004G222150 Sobic004G222150 Sobic003G184666--Sobic004G222150 Sobic001G051400 Sobic001G051400 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic004G116500 Sobic004G116500 Sobic002G416150--Sobic004G116500 Sobic002G416150--Sobic006G088400 Sobic001G264201 Sobic001G264201 Sobic002G416150--Sobic001G264201 Sobic005G120600 Sobic005G120600 Sobic002G416150--Sobic005G120600 Sobic005G139300 Sobic005G139300 Sobic002G416150--Sobic005G139300 Sobic004G353400 Sobic004G353400 Sobic002G416150--Sobic004G353400 Sobic002G416150--Sobic009G224300 Sobic010G221200 Sobic010G221200 Sobic002G416150--Sobic010G221200 Sobic002G416150--Sobic009G155900 Sobic003G326500 Sobic003G326500 Sobic003G183466--Sobic003G326500 Sobic003G183466--Sobic010G143600 Sobic002G173400 Sobic002G173400 Sobic003G183466--Sobic002G173400 Sobic003G129500 Sobic003G129500 Sobic003G183466--Sobic003G129500 Sobic003G183466--Sobic004G278900 Sobic009G120400 Sobic009G120400 Sobic003G183466--Sobic009G120400 Sobic002G095300 Sobic002G095300 Sobic003G183466--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic003G183466--Sobic002G286632 Sobic008G046200 Sobic008G046200 Sobic003G183466--Sobic008G046200
Octagon: transcription factors


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