Gene annotation
Transcriptome id Sobic.009G191700.1
Synonym Sb09g025050
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
signal recognition particle 54 kDa protein, putative, expressed
UniProt C5Z0T3
Pfam PF02881 PF02978 PF00448
Panther DB PTHR11564 PTHR11564:SF5
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT1G48900 : Signal recognition particle, SRP54 subunit protein
RAP-DB (Rice) LOC_Os01g56600.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a044178
Brachypodium KQK09989 , KQK05493
Barley HORVU1Hr1G077990.7 , HORVU1Hr1G077990.6 , HORVU1Hr1G077990.5 , HORVU1Hr1G077990.4 , HORVU1Hr1G077990.3 , HORVU1Hr1G077990.2 , HORVU1Hr1G077990.8 , HORVU2Hr1G020570.4 , HORVU2Hr1G020570.5 , HORVU2Hr1G020570.2 , HORVU2Hr1G020570.3 , HORVU2Hr1G020570.1
Wheat TraesCS1D02G329300 , TraesCS1B02G340600 , TraesCS1A02G327200
Populus PNS99049 , PNS99048 , PNS99052 , PNS99050 , PNS99051


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cDNA sequences
Sobic.009G191700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279500 expressed protein -
2 Sobic.002G429700 AMP deaminase, putative, expressed K01490: AMP deaminase
3 Sobic.003G368901 - -
4 Sobic.001G118700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed -
5 Sobic.001G080900 heat shock protein DnaJ, putative, expressed -
6 Sobic.003G070700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G175900 KH domain-containing protein, putative, expressed K14945: protein quaking
8 Sobic.001G179900 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
9 Sobic.003G267800 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
10 Sobic.007G045900 integral membrane protein DUF6 domain containing protein, expressed -
11 Sobic.005G178800 OsFBX135 - F-box domain containing protein, expressed -
12 Sobic.004G042100 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.006G251500 inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed K10572: inositol-pentakisphosphate 2-kinase
14 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G025600 POLD3 - Putative DNA polymerase delta complex subunit, expressed K03504: DNA polymerase delta subunit 3
18 Sobic.003G001400 expressed protein -
19 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
20 Sobic.009G155900 hhH-GPD superfamily base excision DNA repair protein, expressed -


Gene co-expression network
sample Sobic009G191700 Sobic009G191700 Sobic004G279500 Sobic004G279500 Sobic009G191700--Sobic004G279500 Sobic002G429700 Sobic002G429700 Sobic009G191700--Sobic002G429700 Sobic003G368901 Sobic003G368901 Sobic009G191700--Sobic003G368901 Sobic001G118700 Sobic001G118700 Sobic009G191700--Sobic001G118700 Sobic001G080900 Sobic001G080900 Sobic009G191700--Sobic001G080900 Sobic003G070700 Sobic003G070700 Sobic009G191700--Sobic003G070700 Sobic009G175900 Sobic009G175900 Sobic009G191700--Sobic009G175900 Sobic001G179900 Sobic001G179900 Sobic009G191700--Sobic001G179900 Sobic003G267800 Sobic003G267800 Sobic009G191700--Sobic003G267800 Sobic001G542300 Sobic001G542300 Sobic004G279500--Sobic001G542300 Sobic002G126300 Sobic002G126300 Sobic004G279500--Sobic002G126300 Sobic001G010300 Sobic001G010300 Sobic004G279500--Sobic001G010300 Sobic004G279500--Sobic001G080900 Sobic006G173100 Sobic006G173100 Sobic004G279500--Sobic006G173100 Sobic005G133500 Sobic005G133500 Sobic004G279500--Sobic005G133500 Sobic008G084700 Sobic008G084700 Sobic004G279500--Sobic008G084700 Sobic004G279500--Sobic003G267800 Sobic001G452000 Sobic001G452000 Sobic004G279500--Sobic001G452000 Sobic009G155900 Sobic009G155900 Sobic002G429700--Sobic009G155900 Sobic002G429700--Sobic003G368901 Sobic002G127900 Sobic002G127900 Sobic002G429700--Sobic002G127900 Sobic004G031300 Sobic004G031300 Sobic002G429700--Sobic004G031300 Sobic007G187900 Sobic007G187900 Sobic002G429700--Sobic007G187900 Sobic006G088400 Sobic006G088400 Sobic002G429700--Sobic006G088400 Sobic001G039300 Sobic001G039300 Sobic002G429700--Sobic001G039300 Sobic003G002700 Sobic003G002700 Sobic002G429700--Sobic003G002700 Sobic002G429700--Sobic001G542300 Sobic005G045700 Sobic005G045700 Sobic003G368901--Sobic005G045700 Sobic003G368901--Sobic002G127900 Sobic006G262501 Sobic006G262501 Sobic003G368901--Sobic006G262501 Sobic008G165300 Sobic008G165300 Sobic003G368901--Sobic008G165300 Sobic005G139300 Sobic005G139300 Sobic003G368901--Sobic005G139300 Sobic010G264900 Sobic010G264900 Sobic003G368901--Sobic010G264900 Sobic003G368901--Sobic004G031300 Sobic002G266300 Sobic002G266300 Sobic003G368901--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic003G368901--Sobic007G053100 Sobic001G471000 Sobic001G471000 Sobic001G118700--Sobic001G471000 Sobic001G413800 Sobic001G413800 Sobic001G118700--Sobic001G413800 Sobic010G254900 Sobic010G254900 Sobic001G118700--Sobic010G254900 Sobic001G118700--Sobic001G010300 Sobic004G040200 Sobic004G040200 Sobic001G118700--Sobic004G040200 Sobic006G154100 Sobic006G154100 Sobic001G118700--Sobic006G154100 Sobic004G321700 Sobic004G321700 Sobic001G118700--Sobic004G321700 Sobic001G477700 Sobic001G477700 Sobic001G118700--Sobic001G477700 Sobic002G193300 Sobic002G193300 Sobic001G118700--Sobic002G193300 Sobic001G080900--Sobic005G133500 Sobic001G504200 Sobic001G504200 Sobic001G080900--Sobic001G504200 Sobic010G201500 Sobic010G201500 Sobic001G080900--Sobic010G201500 Sobic008G153000 Sobic008G153000 Sobic001G080900--Sobic008G153000 Sobic001G080900--Sobic008G084700 Sobic002G423200 Sobic002G423200 Sobic001G080900--Sobic002G423200 Sobic007G026000 Sobic007G026000 Sobic001G080900--Sobic007G026000 Sobic004G138000 Sobic004G138000 Sobic001G080900--Sobic004G138000 Sobic009G151200 Sobic009G151200 Sobic001G080900--Sobic009G151200 Sobic010G063300 Sobic010G063300 Sobic003G070700--Sobic010G063300 Sobic009G022100 Sobic009G022100 Sobic003G070700--Sobic009G022100 Sobic005G198200 Sobic005G198200 Sobic003G070700--Sobic005G198200 Sobic004G313300 Sobic004G313300 Sobic003G070700--Sobic004G313300 Sobic002G002500 Sobic002G002500 Sobic003G070700--Sobic002G002500 Sobic004G152000 Sobic004G152000 Sobic003G070700--Sobic004G152000 Sobic006G141800 Sobic006G141800 Sobic003G070700--Sobic006G141800 Sobic004G353400 Sobic004G353400 Sobic003G070700--Sobic004G353400 Sobic003G343600 Sobic003G343600 Sobic003G070700--Sobic003G343600 Sobic003G239900 Sobic003G239900 Sobic009G175900--Sobic003G239900 Sobic009G175900--Sobic003G267800 Sobic002G421700 Sobic002G421700 Sobic009G175900--Sobic002G421700 Sobic006G217200 Sobic006G217200 Sobic009G175900--Sobic006G217200 Sobic003G442000 Sobic003G442000 Sobic009G175900--Sobic003G442000 Sobic001G039700 Sobic001G039700 Sobic009G175900--Sobic001G039700 Sobic004G333700 Sobic004G333700 Sobic009G175900--Sobic004G333700 Sobic001G371000 Sobic001G371000 Sobic009G175900--Sobic001G371000 Sobic005G009200 Sobic005G009200 Sobic009G175900--Sobic005G009200 Sobic001G179900--Sobic006G217200 Sobic001G454301 Sobic001G454301 Sobic001G179900--Sobic001G454301 Sobic007G116400 Sobic007G116400 Sobic001G179900--Sobic007G116400 Sobic004G088400 Sobic004G088400 Sobic001G179900--Sobic004G088400 Sobic002G140800 Sobic002G140800 Sobic001G179900--Sobic002G140800 Sobic010G153466 Sobic010G153466 Sobic001G179900--Sobic010G153466 Sobic003G336800 Sobic003G336800 Sobic001G179900--Sobic003G336800 Sobic009G239351 Sobic009G239351 Sobic001G179900--Sobic009G239351 Sobic009G239301 Sobic009G239301 Sobic001G179900--Sobic009G239301 Sobic003G267800--Sobic005G133500 Sobic003G258900 Sobic003G258900 Sobic003G267800--Sobic003G258900 Sobic002G058400 Sobic002G058400 Sobic003G267800--Sobic002G058400 Sobic003G267800--Sobic003G239900 Sobic003G267800--Sobic009G175900 Sobic002G158700 Sobic002G158700 Sobic003G267800--Sobic002G158700 Sobic003G440700 Sobic003G440700 Sobic003G267800--Sobic003G440700 Sobic003G267800--Sobic006G217200 Sobic002G396000 Sobic002G396000 Sobic003G267800--Sobic002G396000
Octagon: transcription factors


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