Gene annotation
Transcriptome id Sobic.003G001400.2,Sobic.003G001400.1
Synonym Sb03g000310
Functional annotation expressed protein
UniProt C5XJH4 , A0A1B6Q0P0 , A0A120GUR5
Pfam -
Panther DB PTHR37212 PTHR37212:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G28130 : -
RAP-DB (Rice) LOC_Os01g13940.1 : expressed protein
MaizeGDB (Corn) Zm00025a022773
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G001400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
2 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
3 Sobic.001G066300 cell cycle control protein, putative, expressed -
4 Sobic.001G091400 expressed protein -
5 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
6 Sobic.001G398800 FHA domain containing protein, putative, expressed -
7 Sobic.005G178800 OsFBX135 - F-box domain containing protein, expressed -
8 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
9 Sobic.004G332400 neurochondrin family protein, putative, expressed -
10 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
11 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
12 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
14 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
15 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
16 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
17 Sobic.006G040800 expressed protein -
18 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
19 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
20 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)


Gene co-expression network
sample Sobic003G001400 Sobic003G001400 Sobic008G014500 Sobic008G014500 Sobic003G001400--Sobic008G014500 Sobic001G346900 Sobic001G346900 Sobic003G001400--Sobic001G346900 Sobic001G066300 Sobic001G066300 Sobic003G001400--Sobic001G066300 Sobic001G091400 Sobic001G091400 Sobic003G001400--Sobic001G091400 Sobic002G317200 Sobic002G317200 Sobic003G001400--Sobic002G317200 Sobic001G398800 Sobic001G398800 Sobic003G001400--Sobic001G398800 Sobic005G178800 Sobic005G178800 Sobic003G001400--Sobic005G178800 Sobic010G236400 Sobic010G236400 Sobic003G001400--Sobic010G236400 Sobic004G332400 Sobic004G332400 Sobic003G001400--Sobic004G332400 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic008G173100 Sobic008G173100 Sobic001G066300--Sobic008G173100 Sobic006G186400 Sobic006G186400 Sobic001G066300--Sobic006G186400 Sobic001G026200 Sobic001G026200 Sobic001G066300--Sobic001G026200 Sobic007G090430 Sobic007G090430 Sobic001G066300--Sobic007G090430 Sobic007G056500 Sobic007G056500 Sobic001G066300--Sobic007G056500 Sobic001G066300--Sobic001G398800 Sobic002G071500 Sobic002G071500 Sobic001G066300--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic001G066300--Sobic002G264200 Sobic002G063900 Sobic002G063900 Sobic001G066300--Sobic002G063900 Sobic001G091400--Sobic002G071500 Sobic001G091400--Sobic001G026200 Sobic010G116600 Sobic010G116600 Sobic001G091400--Sobic010G116600 Sobic001G091400--Sobic008G014500 Sobic001G091400--Sobic010G236400 Sobic003G289400 Sobic003G289400 Sobic001G091400--Sobic003G289400 Sobic001G091400--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic001G091400--Sobic007G183900 Sobic001G452000 Sobic001G452000 Sobic001G091400--Sobic001G452000 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic001G398800--Sobic004G048800 Sobic001G398800--Sobic001G026200 Sobic003G360400 Sobic003G360400 Sobic001G398800--Sobic003G360400 Sobic001G398800--Sobic001G134300 Sobic001G398800--Sobic002G071500 Sobic010G001100 Sobic010G001100 Sobic001G398800--Sobic010G001100 Sobic001G398800--Sobic007G090430 Sobic010G065300 Sobic010G065300 Sobic001G398800--Sobic010G065300 Sobic004G039200 Sobic004G039200 Sobic001G398800--Sobic004G039200 Sobic005G178800--Sobic001G346900 Sobic005G178800--Sobic003G001400 Sobic005G133500 Sobic005G133500 Sobic005G178800--Sobic005G133500 Sobic002G126300 Sobic002G126300 Sobic005G178800--Sobic002G126300 Sobic005G178800--Sobic004G332400 Sobic001G010300 Sobic001G010300 Sobic005G178800--Sobic001G010300 Sobic003G221600 Sobic003G221600 Sobic005G178800--Sobic003G221600 Sobic005G178800--Sobic001G066300 Sobic005G178800--Sobic004G285000 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G236400--Sobic010G116600 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic006G040800 Sobic006G040800 Sobic004G332400--Sobic006G040800 Sobic008G002500 Sobic008G002500 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic004G332400--Sobic001G346900 Sobic004G332400--Sobic008G147200 Sobic004G040200 Sobic004G040200 Sobic004G332400--Sobic004G040200
Octagon: transcription factors


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