Gene annotation
| Transcriptome id | Sobic.007G045900.1 |
|---|---|
| Synonym | Sb07g003790 |
| Functional annotation | integral membrane protein DUF6 domain containing protein, expressed |
| UniProt | A0A1B6PFV5 |
| Pfam | PF00892 |
| Panther DB | PTHR31218:SF23 PTHR31218 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0016021integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT5G47470 : Nodulin MtN21 /EamA-like transporter family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g01660.1 : integral membrane protein DUF6 domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQJ95335 |
| Barley | HORVU0Hr1G030660.1 , HORVU7Hr1G071230.1 , HORVU0Hr1G027480.1 |
| Wheat | TraesCS7D02G296100 , TraesCS7B02G201300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G066500 | chaperone protein clpB 1, putative, expressed | K03695: ATP-dependent Clp protease ATP-binding subunit ClpB |
| 2 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 3 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 4 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 5 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 6 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 7 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 8 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 9 | Sobic.007G168100 | peptidyl-prolyl cis-trans isomerase, putative, expressed | - |
| 10 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 11 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 12 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 13 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 14 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 15 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 16 | Sobic.001G125300 | ethylene-insensitive protein, putative, expressed | K14513: ethylene-insensitive protein 2 |
| 17 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 18 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 19 | Sobic.006G055900 | expressed protein | - |
| 20 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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