Gene annotation
Transcriptome id Sobic.004G042100.1,Sobic.004G042100.2
Synonym Sb04g003650
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XUQ0
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G24870 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g05692.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017346 , Zm00025a019003 , Zm00025a019168 , Zm00025a045888
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
2 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
3 Sobic.009G175900 KH domain-containing protein, putative, expressed K14945: protein quaking
4 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
5 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
6 Sobic.006G124900 MA3 domain containing protein, expressed -
7 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
8 Sobic.010G190600 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
9 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
10 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
11 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
12 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
13 Sobic.010G091000 glutaredoxin domain containing protein, putative, expressed -
14 Sobic.004G031700 expressed protein -
15 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
17 Sobic.009G135800 CUE domain containing protein, expressed -
18 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
20 Sobic.009G231300 drought induced 19 protein, putative, expressed -


Gene co-expression network
sample Sobic004G042100 Sobic004G042100 Sobic007G130600 Sobic007G130600 Sobic004G042100--Sobic007G130600 Sobic004G034400 Sobic004G034400 Sobic004G042100--Sobic004G034400 Sobic009G175900 Sobic009G175900 Sobic004G042100--Sobic009G175900 Sobic003G239900 Sobic003G239900 Sobic004G042100--Sobic003G239900 Sobic005G181000 Sobic005G181000 Sobic004G042100--Sobic005G181000 Sobic006G124900 Sobic006G124900 Sobic004G042100--Sobic006G124900 Sobic001G371000 Sobic001G371000 Sobic004G042100--Sobic001G371000 Sobic010G190600 Sobic010G190600 Sobic004G042100--Sobic010G190600 Sobic001G221100 Sobic001G221100 Sobic004G042100--Sobic001G221100 Sobic001G194900 Sobic001G194900 Sobic007G130600--Sobic001G194900 Sobic007G130600--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic010G001600 Sobic010G001600 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic010G042900 Sobic010G042900 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic009G054700 Sobic009G054700 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic009G175900--Sobic003G239900 Sobic003G267800 Sobic003G267800 Sobic009G175900--Sobic003G267800 Sobic002G421700 Sobic002G421700 Sobic009G175900--Sobic002G421700 Sobic006G217200 Sobic006G217200 Sobic009G175900--Sobic006G217200 Sobic003G442000 Sobic003G442000 Sobic009G175900--Sobic003G442000 Sobic001G039700 Sobic001G039700 Sobic009G175900--Sobic001G039700 Sobic004G333700 Sobic004G333700 Sobic009G175900--Sobic004G333700 Sobic009G175900--Sobic001G371000 Sobic005G009200 Sobic005G009200 Sobic009G175900--Sobic005G009200 Sobic008G117200 Sobic008G117200 Sobic003G239900--Sobic008G117200 Sobic003G239900--Sobic003G267800 Sobic003G239900--Sobic009G175900 Sobic003G239900--Sobic006G217200 Sobic008G078100 Sobic008G078100 Sobic003G239900--Sobic008G078100 Sobic003G239900--Sobic001G371000 Sobic003G239900--Sobic002G421700 Sobic003G239900--Sobic001G039700 Sobic004G031700 Sobic004G031700 Sobic003G239900--Sobic004G031700 Sobic005G181000--Sobic007G130600 Sobic005G181000--Sobic009G027000 Sobic006G122400 Sobic006G122400 Sobic005G181000--Sobic006G122400 Sobic005G181000--Sobic006G124900 Sobic001G439500 Sobic001G439500 Sobic005G181000--Sobic001G439500 Sobic002G253500 Sobic002G253500 Sobic005G181000--Sobic002G253500 Sobic007G185900 Sobic007G185900 Sobic005G181000--Sobic007G185900 Sobic002G313300 Sobic002G313300 Sobic005G181000--Sobic002G313300 Sobic002G039500 Sobic002G039500 Sobic005G181000--Sobic002G039500 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic001G543800 Sobic001G543800 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic002G362300 Sobic002G362300 Sobic001G371000--Sobic002G362300 Sobic001G371000--Sobic005G009200 Sobic004G026100 Sobic004G026100 Sobic001G371000--Sobic004G026100 Sobic001G371000--Sobic003G239900 Sobic009G216000 Sobic009G216000 Sobic001G371000--Sobic009G216000 Sobic009G151200 Sobic009G151200 Sobic001G371000--Sobic009G151200 Sobic009G022100 Sobic009G022100 Sobic001G371000--Sobic009G022100 Sobic001G371000--Sobic003G442000 Sobic001G371000--Sobic008G117200 Sobic002G077200 Sobic002G077200 Sobic010G190600--Sobic002G077200 Sobic010G190600--Sobic002G313300 Sobic004G256600 Sobic004G256600 Sobic010G190600--Sobic004G256600 Sobic009G231300 Sobic009G231300 Sobic010G190600--Sobic009G231300 Sobic009G000500 Sobic009G000500 Sobic010G190600--Sobic009G000500 Sobic009G135800 Sobic009G135800 Sobic010G190600--Sobic009G135800 Sobic010G190600--Sobic009G178600 Sobic006G128900 Sobic006G128900 Sobic010G190600--Sobic006G128900 Sobic003G258400 Sobic003G258400 Sobic010G190600--Sobic003G258400 Sobic001G221100--Sobic001G039700 Sobic009G032300 Sobic009G032300 Sobic001G221100--Sobic009G032300 Sobic001G221100--Sobic010G042900 Sobic003G145900 Sobic003G145900 Sobic001G221100--Sobic003G145900 Sobic004G027100 Sobic004G027100 Sobic001G221100--Sobic004G027100 Sobic001G221100--Sobic004G034400 Sobic004G330900 Sobic004G330900 Sobic001G221100--Sobic004G330900 Sobic005G014950 Sobic005G014950 Sobic001G221100--Sobic005G014950 Sobic002G197100 Sobic002G197100 Sobic001G221100--Sobic002G197100
Octagon: transcription factors


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