Gene annotation
Transcriptome id Sobic.001G118700.3
Synonym COS1, Sb01g010470
Functional annotation 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
UniProt A0A1Z5S5A9
Pfam PF00885
Panther DB PTHR21058
NCBI CDD KOG3243; 6,7-dimethyl-8-ribityllumazine synthase
KEGG Orthology -
Gene Ontology GO:0009349; riboflavin synthase complex GO:0009231riboflavin biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G44050 : 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase
RAP-DB (Rice) LOC_Os04g42000.1 : 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057234 , Zm00025a012254 , Zm00025a009497
Brachypodium KQK00225
Barley -
Wheat TraesCS2A02G352600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
2 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
3 Sobic.010G254900 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14321: NUPL2, NUP42, nucleoporin-like protein 2
4 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
6 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
7 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
9 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
10 Sobic.004G356800 OsRR3 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
11 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
12 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
13 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
14 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
15 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
16 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
17 Sobic.010G204400 phox domain-containing protein, putative, expressed -
18 Sobic.004G332400 neurochondrin family protein, putative, expressed -
19 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
20 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -


Gene co-expression network
sample Sobic001G118700 Sobic001G118700 Sobic001G471000 Sobic001G471000 Sobic001G118700--Sobic001G471000 Sobic001G413800 Sobic001G413800 Sobic001G118700--Sobic001G413800 Sobic010G254900 Sobic010G254900 Sobic001G118700--Sobic010G254900 Sobic001G010300 Sobic001G010300 Sobic001G118700--Sobic001G010300 Sobic004G040200 Sobic004G040200 Sobic001G118700--Sobic004G040200 Sobic006G154100 Sobic006G154100 Sobic001G118700--Sobic006G154100 Sobic004G321700 Sobic004G321700 Sobic001G118700--Sobic004G321700 Sobic001G477700 Sobic001G477700 Sobic001G118700--Sobic001G477700 Sobic002G193300 Sobic002G193300 Sobic001G118700--Sobic002G193300 Sobic007G112600 Sobic007G112600 Sobic001G471000--Sobic007G112600 Sobic010G235200 Sobic010G235200 Sobic001G471000--Sobic010G235200 Sobic006G142400 Sobic006G142400 Sobic001G471000--Sobic006G142400 Sobic007G042900 Sobic007G042900 Sobic001G471000--Sobic007G042900 Sobic004G068500 Sobic004G068500 Sobic001G471000--Sobic004G068500 Sobic005G155100 Sobic005G155100 Sobic001G471000--Sobic005G155100 Sobic007G077400 Sobic007G077400 Sobic001G471000--Sobic007G077400 Sobic001G471000--Sobic001G477700 Sobic007G162800 Sobic007G162800 Sobic001G471000--Sobic007G162800 Sobic001G413800--Sobic001G477700 Sobic006G180700 Sobic006G180700 Sobic001G413800--Sobic006G180700 Sobic001G034500 Sobic001G034500 Sobic001G413800--Sobic001G034500 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic001G413800--Sobic007G042900 Sobic010G204400 Sobic010G204400 Sobic001G413800--Sobic010G204400 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000 Sobic003G212900 Sobic003G212900 Sobic010G254900--Sobic003G212900 Sobic002G422100 Sobic002G422100 Sobic010G254900--Sobic002G422100 Sobic010G254900--Sobic006G281700 Sobic007G218000 Sobic007G218000 Sobic010G254900--Sobic007G218000 Sobic001G308400 Sobic001G308400 Sobic010G254900--Sobic001G308400 Sobic003G180900 Sobic003G180900 Sobic010G254900--Sobic003G180900 Sobic010G254900--Sobic010G204400 Sobic001G091400 Sobic001G091400 Sobic010G254900--Sobic001G091400 Sobic001G452000 Sobic001G452000 Sobic010G254900--Sobic001G452000 Sobic010G236400 Sobic010G236400 Sobic001G010300--Sobic010G236400 Sobic010G245000 Sobic010G245000 Sobic001G010300--Sobic010G245000 Sobic004G084300 Sobic004G084300 Sobic001G010300--Sobic004G084300 Sobic006G195700 Sobic006G195700 Sobic001G010300--Sobic006G195700 Sobic007G075900 Sobic007G075900 Sobic001G010300--Sobic007G075900 Sobic004G158200 Sobic004G158200 Sobic001G010300--Sobic004G158200 Sobic005G154500 Sobic005G154500 Sobic001G010300--Sobic005G154500 Sobic008G173100 Sobic008G173100 Sobic001G010300--Sobic008G173100 Sobic003G401100 Sobic003G401100 Sobic001G010300--Sobic003G401100 Sobic004G332400 Sobic004G332400 Sobic004G040200--Sobic004G332400 Sobic006G040800 Sobic006G040800 Sobic004G040200--Sobic006G040800 Sobic002G048700 Sobic002G048700 Sobic004G040200--Sobic002G048700 Sobic008G002500 Sobic008G002500 Sobic004G040200--Sobic008G002500 Sobic009G255600 Sobic009G255600 Sobic004G040200--Sobic009G255600 Sobic002G361400 Sobic002G361400 Sobic004G040200--Sobic002G361400 Sobic007G225100 Sobic007G225100 Sobic004G040200--Sobic007G225100 Sobic001G051700 Sobic001G051700 Sobic004G040200--Sobic001G051700 Sobic004G123400 Sobic004G123400 Sobic004G040200--Sobic004G123400 Sobic002G127200 Sobic002G127200 Sobic006G154100--Sobic002G127200 Sobic006G154100--Sobic001G034500 Sobic005G114500 Sobic005G114500 Sobic006G154100--Sobic005G114500 Sobic001G097500 Sobic001G097500 Sobic006G154100--Sobic001G097500 Sobic006G270600 Sobic006G270600 Sobic006G154100--Sobic006G270600 Sobic006G002800 Sobic006G002800 Sobic006G154100--Sobic006G002800 Sobic003G230600 Sobic003G230600 Sobic006G154100--Sobic003G230600 Sobic004G017300 Sobic004G017300 Sobic006G154100--Sobic004G017300 Sobic003G006400 Sobic003G006400 Sobic006G154100--Sobic003G006400 Sobic008G147200 Sobic008G147200 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G321700--Sobic004G332400 Sobic001G346900 Sobic001G346900 Sobic004G321700--Sobic001G346900 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700 Sobic006G131000 Sobic006G131000 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic001G477700--Sobic007G042900 Sobic001G477700--Sobic001G034500 Sobic007G196900 Sobic007G196900 Sobic001G477700--Sobic007G196900 Sobic007G180600 Sobic007G180600 Sobic001G477700--Sobic007G180600 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic001G477700--Sobic010G204400 Sobic009G249700 Sobic009G249700 Sobic002G193300--Sobic009G249700 Sobic010G086600 Sobic010G086600 Sobic002G193300--Sobic010G086600 Sobic009G119000 Sobic009G119000 Sobic002G193300--Sobic009G119000 Sobic003G093800 Sobic003G093800 Sobic002G193300--Sobic003G093800 Sobic004G353000 Sobic004G353000 Sobic002G193300--Sobic004G353000 Sobic002G193300--Sobic007G042900 Sobic002G193300--Sobic003G212900 Sobic010G089400 Sobic010G089400 Sobic002G193300--Sobic010G089400 Sobic003G362600 Sobic003G362600 Sobic002G193300--Sobic003G362600
Octagon: transcription factors


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