Gene annotation
Transcriptome id Sobic.010G254900.1
Synonym Sb10g029250
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5Z997
Pfam PF00642
Panther DB PTHR11224 PTHR11224:SF36
NCBI CDD -
KEGG Orthology K14321; NUPL2, NUP42, nucleoporin-like protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75340 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os06g49080.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a018403
Brachypodium KQK17442
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G254900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G212900 zinc ion binding protein, putative, expressed -
2 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
3 Sobic.006G281700 DUF803 domain containing, putative, expressed -
4 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
5 Sobic.001G308400 expressed protein -
6 Sobic.003G180900 SLT1 protein, putative, expressed -
7 Sobic.010G204400 phox domain-containing protein, putative, expressed -
8 Sobic.001G091400 expressed protein -
9 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
10 Sobic.009G200500 Homeobox domain containing protein, expressed -
11 Sobic.002G295500 expressed protein -
12 Sobic.002G056701 - -
13 Sobic.006G131000 expressed protein K11968: ariadne-1
14 Sobic.009G249700 expressed protein -
15 Sobic.006G224800 expressed protein -
16 Sobic.003G416700 homeobox domain containing protein, expressed -
17 Sobic.006G216200 expressed protein -
18 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
20 Sobic.004G265500 SET domain protein SDG117, putative, expressed -


Gene co-expression network
sample Sobic010G254900 Sobic010G254900 Sobic003G212900 Sobic003G212900 Sobic010G254900--Sobic003G212900 Sobic002G422100 Sobic002G422100 Sobic010G254900--Sobic002G422100 Sobic006G281700 Sobic006G281700 Sobic010G254900--Sobic006G281700 Sobic007G218000 Sobic007G218000 Sobic010G254900--Sobic007G218000 Sobic001G308400 Sobic001G308400 Sobic010G254900--Sobic001G308400 Sobic003G180900 Sobic003G180900 Sobic010G254900--Sobic003G180900 Sobic010G204400 Sobic010G204400 Sobic010G254900--Sobic010G204400 Sobic001G091400 Sobic001G091400 Sobic010G254900--Sobic001G091400 Sobic001G452000 Sobic001G452000 Sobic010G254900--Sobic001G452000 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic001G042200 Sobic001G042200 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic009G119000 Sobic009G119000 Sobic002G422100--Sobic009G119000 Sobic002G422100--Sobic003G212900 Sobic002G422100--Sobic003G416700 Sobic001G134300 Sobic001G134300 Sobic002G422100--Sobic001G134300 Sobic001G346900 Sobic001G346900 Sobic002G422100--Sobic001G346900 Sobic010G001100 Sobic010G001100 Sobic002G422100--Sobic010G001100 Sobic002G422100--Sobic001G091400 Sobic002G154000 Sobic002G154000 Sobic002G422100--Sobic002G154000 Sobic001G063700 Sobic001G063700 Sobic002G422100--Sobic001G063700 Sobic002G063900 Sobic002G063900 Sobic006G281700--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic006G281700--Sobic002G260400 Sobic004G246100 Sobic004G246100 Sobic006G281700--Sobic004G246100 Sobic003G160000 Sobic003G160000 Sobic006G281700--Sobic003G160000 Sobic009G260650 Sobic009G260650 Sobic006G281700--Sobic009G260650 Sobic006G281700--Sobic001G042200 Sobic006G281700--Sobic007G218000 Sobic006G281700--Sobic010G204400 Sobic002G056701 Sobic002G056701 Sobic006G281700--Sobic002G056701 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic010G169900 Sobic010G169900 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic008G084700 Sobic008G084700 Sobic003G180900--Sobic008G084700 Sobic006G116100 Sobic006G116100 Sobic003G180900--Sobic006G116100 Sobic005G118600 Sobic005G118600 Sobic003G180900--Sobic005G118600 Sobic003G444800 Sobic003G444800 Sobic003G180900--Sobic003G444800 Sobic003G180900--Sobic009G119000 Sobic003G059750 Sobic003G059750 Sobic003G180900--Sobic003G059750 Sobic003G180900--SobicK028600 Sobic002G299700 Sobic002G299700 Sobic003G180900--Sobic002G299700 Sobic006G032500 Sobic006G032500 Sobic003G180900--Sobic006G032500 Sobic006G163800 Sobic006G163800 Sobic010G204400--Sobic006G163800 Sobic006G195700 Sobic006G195700 Sobic010G204400--Sobic006G195700 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic010G204400--Sobic010G236400 Sobic010G204400--Sobic007G132100 Sobic010G204400--Sobic003G416700 Sobic010G204400--Sobic006G131000 Sobic010G116600 Sobic010G116600 Sobic010G204400--Sobic010G116600 Sobic002G071500 Sobic002G071500 Sobic001G091400--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic001G091400--Sobic001G026200 Sobic001G091400--Sobic010G116600 Sobic008G014500 Sobic008G014500 Sobic001G091400--Sobic008G014500 Sobic001G091400--Sobic010G236400 Sobic003G289400 Sobic003G289400 Sobic001G091400--Sobic003G289400 Sobic001G398800 Sobic001G398800 Sobic001G091400--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic001G091400--Sobic007G183900 Sobic001G091400--Sobic001G452000 Sobic004G084700 Sobic004G084700 Sobic001G452000--Sobic004G084700 Sobic001G452000--Sobic005G118600 Sobic001G441400 Sobic001G441400 Sobic001G452000--Sobic001G441400 Sobic001G452000--Sobic010G236400 Sobic003G445400 Sobic003G445400 Sobic001G452000--Sobic003G445400 Sobic004G067700 Sobic004G067700 Sobic001G452000--Sobic004G067700 Sobic001G452000--Sobic001G091400 Sobic001G452000--Sobic008G084700 Sobic001G452000--Sobic002G260400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.