Gene annotation
Transcriptome id Sobic.003G070700.1
Synonym Sb03g005990
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XPZ5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59960 : -
RAP-DB (Rice) LOC_Os01g05830.1 : expressed protein
MaizeGDB (Corn) Zm00025a023448
Brachypodium KQK02736
Barley -
Wheat TraesCS3B02G091100 , TraesCS3B02G091100 , TraesCS3A02G076900 , TraesCS3D02G077100
Populus PNT56277 , PNT56279 , PNT19255 , PNT56278


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cDNA sequences
Sobic.003G070700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G063300 protein kinase domain containing protein, expressed -
2 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
3 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
4 Sobic.004G313300 expressed protein -
5 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
6 Sobic.004G152000 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.006G141800 expressed protein -
8 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
9 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
11 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
12 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
13 Sobic.009G059400 expressed protein -
14 Sobic.005G178950 - -
15 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
16 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
17 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.001G204300 zinc finger, RING-type, putative, expressed -
20 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1


Gene co-expression network
sample Sobic003G070700 Sobic003G070700 Sobic010G063300 Sobic010G063300 Sobic003G070700--Sobic010G063300 Sobic009G022100 Sobic009G022100 Sobic003G070700--Sobic009G022100 Sobic005G198200 Sobic005G198200 Sobic003G070700--Sobic005G198200 Sobic004G313300 Sobic004G313300 Sobic003G070700--Sobic004G313300 Sobic002G002500 Sobic002G002500 Sobic003G070700--Sobic002G002500 Sobic004G152000 Sobic004G152000 Sobic003G070700--Sobic004G152000 Sobic006G141800 Sobic006G141800 Sobic003G070700--Sobic006G141800 Sobic004G353400 Sobic004G353400 Sobic003G070700--Sobic004G353400 Sobic003G343600 Sobic003G343600 Sobic003G070700--Sobic003G343600 Sobic010G063300--Sobic003G070700 Sobic003G336800 Sobic003G336800 Sobic010G063300--Sobic003G336800 Sobic006G130200 Sobic006G130200 Sobic010G063300--Sobic006G130200 Sobic010G063300--Sobic006G141800 Sobic010G063300--Sobic004G313300 Sobic010G063300--Sobic004G152000 Sobic006G144000 Sobic006G144000 Sobic010G063300--Sobic006G144000 Sobic010G174800 Sobic010G174800 Sobic010G063300--Sobic010G174800 Sobic009G000400 Sobic009G000400 Sobic010G063300--Sobic009G000400 Sobic002G095700 Sobic002G095700 Sobic009G022100--Sobic002G095700 Sobic003G433500 Sobic003G433500 Sobic009G022100--Sobic003G433500 Sobic005G030300 Sobic005G030300 Sobic009G022100--Sobic005G030300 Sobic009G192500 Sobic009G192500 Sobic009G022100--Sobic009G192500 Sobic008G073000 Sobic008G073000 Sobic009G022100--Sobic008G073000 Sobic006G261100 Sobic006G261100 Sobic009G022100--Sobic006G261100 Sobic001G469800 Sobic001G469800 Sobic009G022100--Sobic001G469800 Sobic002G362300 Sobic002G362300 Sobic009G022100--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic009G022100--Sobic001G371000 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic009G113100 Sobic009G113100 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic004G313300--Sobic006G144000 Sobic004G313300--Sobic010G063300 Sobic006G224300 Sobic006G224300 Sobic004G313300--Sobic006G224300 Sobic004G313300--Sobic003G070700 Sobic004G313300--Sobic004G353400 Sobic009G125000 Sobic009G125000 Sobic004G313300--Sobic009G125000 Sobic005G040900 Sobic005G040900 Sobic004G313300--Sobic005G040900 Sobic004G313300--Sobic005G198200 Sobic004G313300--Sobic004G152000 Sobic002G002500--Sobic009G022100 Sobic002G067800 Sobic002G067800 Sobic002G002500--Sobic002G067800 Sobic002G002500--Sobic008G073000 Sobic002G045400 Sobic002G045400 Sobic002G002500--Sobic002G045400 Sobic008G165100 Sobic008G165100 Sobic002G002500--Sobic008G165100 Sobic002G002500--Sobic003G433500 Sobic005G059100 Sobic005G059100 Sobic002G002500--Sobic005G059100 Sobic009G216000 Sobic009G216000 Sobic002G002500--Sobic009G216000 Sobic002G159200 Sobic002G159200 Sobic002G002500--Sobic002G159200 Sobic004G152000--Sobic010G174800 Sobic003G389800 Sobic003G389800 Sobic004G152000--Sobic003G389800 Sobic004G152000--Sobic010G063300 Sobic001G390500 Sobic001G390500 Sobic004G152000--Sobic001G390500 Sobic002G121000 Sobic002G121000 Sobic004G152000--Sobic002G121000 Sobic002G088700 Sobic002G088700 Sobic004G152000--Sobic002G088700 Sobic001G061700 Sobic001G061700 Sobic004G152000--Sobic001G061700 Sobic003G248500 Sobic003G248500 Sobic004G152000--Sobic003G248500 Sobic003G084750 Sobic003G084750 Sobic004G152000--Sobic003G084750 Sobic006G141800--Sobic010G063300 Sobic009G228400 Sobic009G228400 Sobic006G141800--Sobic009G228400 Sobic001G321900 Sobic001G321900 Sobic006G141800--Sobic001G321900 Sobic006G215100 Sobic006G215100 Sobic006G141800--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic006G141800--Sobic010G073600 Sobic006G141800--Sobic006G130200 Sobic006G141800--Sobic003G070700 Sobic002G147100 Sobic002G147100 Sobic006G141800--Sobic002G147100 Sobic010G074900 Sobic010G074900 Sobic006G141800--Sobic010G074900 Sobic006G091000 Sobic006G091000 Sobic004G353400--Sobic006G091000 Sobic009G040800 Sobic009G040800 Sobic004G353400--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic004G353400--Sobic005G178950 Sobic004G042900 Sobic004G042900 Sobic004G353400--Sobic004G042900 Sobic007G053400 Sobic007G053400 Sobic004G353400--Sobic007G053400 Sobic001G100800 Sobic001G100800 Sobic004G353400--Sobic001G100800 Sobic007G016900 Sobic007G016900 Sobic004G353400--Sobic007G016900 Sobic004G353400--Sobic006G144000 Sobic002G299100 Sobic002G299100 Sobic004G353400--Sobic002G299100 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic002G223300 Sobic002G223300 Sobic003G343600--Sobic002G223300 Sobic003G343600--Sobic005G072400 Sobic006G248500 Sobic006G248500 Sobic003G343600--Sobic006G248500 Sobic004G285000 Sobic004G285000 Sobic003G343600--Sobic004G285000 Sobic002G268900 Sobic002G268900 Sobic003G343600--Sobic002G268900 Sobic003G343600--Sobic005G198200 Sobic006G278200 Sobic006G278200 Sobic003G343600--Sobic006G278200 Sobic004G085300 Sobic004G085300 Sobic003G343600--Sobic004G085300
Octagon: transcription factors


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