Gene annotation
Transcriptome id Sobic.001G204300.1
Synonym Sb01g018050
Functional annotation zinc finger, RING-type, putative, expressed
UniProt C5WX89
Pfam PF13920
Panther DB PTHR15315 PTHR15315:SF37
NCBI CDD KOG1039; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47160 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os10g35670.1 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a006445 , Zm00025a006437
Brachypodium KQJ97312 , KQJ97313 , KQJ97310 , KQJ97311 , KQJ97314
Barley HORVU7Hr1G053120.2 , HORVU7Hr1G053120.3 , HORVU7Hr1G053120.1 , HORVU4Hr1G028350.1 , HORVU1Hr1G045110.6 , HORVU1Hr1G045110.7 , HORVU1Hr1G045110.4 , HORVU1Hr1G045110.5 , HORVU1Hr1G045110.2 , HORVU1Hr1G045110.3 , HORVU1Hr1G045110.1 , HORVU1Hr1G045110.8 , HORVU1Hr1G045110.9
Wheat TraesCS1B02G187600 , TraesCS1A02G169300 , TraesCS1A02G169300 , TraesCS1D02G167300 , TraesCS1D02G167300
Populus -


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cDNA sequences
Sobic.001G204300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
2 Sobic.010G110000 asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
3 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
4 Sobic.004G272900 expressed protein -
5 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
6 Sobic.001G079100 upstream activation factor subunit spp27, putative, expressed K15223: UAF30, upstream activation factor subunit UAF30
7 Sobic.010G021200 GAGA-binding protein, putative, expressed -
8 Sobic.003G420700 expressed protein -
9 Sobic.001G033400 protein kinase domain containing protein, expressed -
10 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
11 Sobic.004G141000 cation transport regulator-like protein 1, putative, expressed -
12 Sobic.008G111700 expressed protein -
13 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
14 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
15 Sobic.002G014700 OsFBX209 - F-box domain containing protein, expressed -
16 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
17 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
18 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
19 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
20 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic001G204300 Sobic001G204300 Sobic006G261100 Sobic006G261100 Sobic001G204300--Sobic006G261100 Sobic010G110000 Sobic010G110000 Sobic001G204300--Sobic010G110000 Sobic009G192500 Sobic009G192500 Sobic001G204300--Sobic009G192500 Sobic004G272900 Sobic004G272900 Sobic001G204300--Sobic004G272900 Sobic002G329300 Sobic002G329300 Sobic001G204300--Sobic002G329300 Sobic001G079100 Sobic001G079100 Sobic001G204300--Sobic001G079100 Sobic010G021200 Sobic010G021200 Sobic001G204300--Sobic010G021200 Sobic003G420700 Sobic003G420700 Sobic001G204300--Sobic003G420700 Sobic001G033400 Sobic001G033400 Sobic001G204300--Sobic001G033400 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic003G415100 Sobic003G415100 Sobic010G110000--Sobic003G415100 Sobic009G113100 Sobic009G113100 Sobic010G110000--Sobic009G113100 Sobic005G198200 Sobic005G198200 Sobic010G110000--Sobic005G198200 Sobic003G122300 Sobic003G122300 Sobic010G110000--Sobic003G122300 Sobic008G179800 Sobic008G179800 Sobic010G110000--Sobic008G179800 Sobic009G069200 Sobic009G069200 Sobic010G110000--Sobic009G069200 Sobic002G315100 Sobic002G315100 Sobic010G110000--Sobic002G315100 Sobic006G170700 Sobic006G170700 Sobic010G110000--Sobic006G170700 Sobic008G162100 Sobic008G162100 Sobic010G110000--Sobic008G162100 Sobic003G132700 Sobic003G132700 Sobic009G192500--Sobic003G132700 Sobic009G192500--Sobic007G117100 Sobic002G430900 Sobic002G430900 Sobic009G192500--Sobic002G430900 Sobic009G192500--Sobic009G022100 Sobic007G125700 Sobic007G125700 Sobic009G192500--Sobic007G125700 Sobic002G095700 Sobic002G095700 Sobic009G192500--Sobic002G095700 Sobic003G253400 Sobic003G253400 Sobic009G192500--Sobic003G253400 Sobic002G223300 Sobic002G223300 Sobic009G192500--Sobic002G223300 Sobic004G229100 Sobic004G229100 Sobic009G192500--Sobic004G229100 Sobic002G403200 Sobic002G403200 Sobic004G272900--Sobic002G403200 Sobic008G115600 Sobic008G115600 Sobic004G272900--Sobic008G115600 Sobic004G272900--Sobic003G415100 Sobic010G256200 Sobic010G256200 Sobic004G272900--Sobic010G256200 Sobic001G157600 Sobic001G157600 Sobic004G272900--Sobic001G157600 Sobic002G014700 Sobic002G014700 Sobic004G272900--Sobic002G014700 Sobic002G306600 Sobic002G306600 Sobic004G272900--Sobic002G306600 Sobic003G140900 Sobic003G140900 Sobic004G272900--Sobic003G140900 Sobic004G272900--Sobic006G261100 Sobic002G045400 Sobic002G045400 Sobic002G329300--Sobic002G045400 Sobic001G309100 Sobic001G309100 Sobic002G329300--Sobic001G309100 Sobic008G073000 Sobic008G073000 Sobic002G329300--Sobic008G073000 Sobic002G329300--Sobic001G038100 Sobic003G433500 Sobic003G433500 Sobic002G329300--Sobic003G433500 Sobic002G362300 Sobic002G362300 Sobic002G329300--Sobic002G362300 Sobic005G030300 Sobic005G030300 Sobic002G329300--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G329300--Sobic008G165100 Sobic003G136800 Sobic003G136800 Sobic002G329300--Sobic003G136800 Sobic001G079100--Sobic006G261100 Sobic001G079100--Sobic002G276900 Sobic002G359900 Sobic002G359900 Sobic001G079100--Sobic002G359900 Sobic001G079100--Sobic001G038100 Sobic001G230500 Sobic001G230500 Sobic001G079100--Sobic001G230500 Sobic001G079100--Sobic002G403200 Sobic010G253100 Sobic010G253100 Sobic001G079100--Sobic010G253100 Sobic001G079100--Sobic006G120800 Sobic006G051900 Sobic006G051900 Sobic001G079100--Sobic006G051900 Sobic007G041300 Sobic007G041300 Sobic010G021200--Sobic007G041300 Sobic006G276000 Sobic006G276000 Sobic010G021200--Sobic006G276000 Sobic010G021200--Sobic006G051900 Sobic010G029900 Sobic010G029900 Sobic010G021200--Sobic010G029900 Sobic010G015900 Sobic010G015900 Sobic010G021200--Sobic010G015900 Sobic006G278200 Sobic006G278200 Sobic010G021200--Sobic006G278200 Sobic001G480550 Sobic001G480550 Sobic010G021200--Sobic001G480550 Sobic007G002900 Sobic007G002900 Sobic010G021200--Sobic007G002900 Sobic010G194700 Sobic010G194700 Sobic010G021200--Sobic010G194700 Sobic010G193800 Sobic010G193800 Sobic003G420700--Sobic010G193800 Sobic003G420700--Sobic001G038100 Sobic002G077900 Sobic002G077900 Sobic003G420700--Sobic002G077900 Sobic003G420700--Sobic001G309100 Sobic001G285300 Sobic001G285300 Sobic003G420700--Sobic001G285300 Sobic003G420700--Sobic007G117100 Sobic003G420700--Sobic002G014700 Sobic009G036900 Sobic009G036900 Sobic003G420700--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic003G420700--Sobic003G024800 Sobic003G035500 Sobic003G035500 Sobic001G033400--Sobic003G035500 Sobic002G341100 Sobic002G341100 Sobic001G033400--Sobic002G341100 Sobic010G207400 Sobic010G207400 Sobic001G033400--Sobic010G207400 Sobic001G041400 Sobic001G041400 Sobic001G033400--Sobic001G041400 Sobic007G078300 Sobic007G078300 Sobic001G033400--Sobic007G078300 Sobic003G004500 Sobic003G004500 Sobic001G033400--Sobic003G004500 Sobic010G189100 Sobic010G189100 Sobic001G033400--Sobic010G189100 Sobic005G050600 Sobic005G050600 Sobic001G033400--Sobic005G050600 Sobic001G033400--Sobic002G403200
Octagon: transcription factors


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