Gene annotation
| Transcriptome id | Sobic.004G141000.1 |
|---|---|
| Synonym | Sb04g017430 |
| Functional annotation | cation transport regulator-like protein 1, putative, expressed |
| UniProt | A0A194YPL8 |
| Pfam | PF04752 |
| Panther DB | PTHR12192 PTHR12192:SF10 |
| NCBI CDD | KOG3182; Predicted cation transporter |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G31290 : ChaC-like family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g26700.1 : cation transport regulator-like protein 1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000491 , Zm00025a017171 , Zm00025a020301 |
| Brachypodium | KQJ99413 , KQJ99415 , KQJ99414 , PNT68585 |
| Barley | HORVU6Hr1G012320.2 , HORVU6Hr1G012320.1 |
| Wheat | TraesCS6A02G068300 , TraesCS6B02G092200 , TraesCS6D02G065900 , TraesCS6A02G384800 |
| Populus | - |
JBrowse
| Sobic.004G141000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G120600 | Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed | - |
| 2 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 3 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 4 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 5 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 6 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 7 | Sobic.003G363400 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 8 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 9 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 10 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 11 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 12 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 13 | Sobic.007G075250 | - | - |
| 14 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 15 | Sobic.001G485200 | AP2 domain containing protein, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 16 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 17 | Sobic.006G055900 | expressed protein | - |
| 18 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 19 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 20 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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